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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
89
heart
86
stomach
81
kidney
73
brain
67
lung
67
muscle of arm
62
small intestine
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
muscle of back
52
left lung
47
liver
47
thymus
45
right lung
42
right kidney
41
islet of Langerhans
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
33
spleen
32
heart left ventricle
31
adipose tissue
31
spinal cord
22
sigmoid colon
22
tibial nerve
21
body of pancreas
20
ovary
20
pancreas
20
pigmented layer of retina
19
caudate nucleus
19
thyroid gland
19
transverse colon
18
coronary artery
18
gastrocnemius medialis
18
subcutaneous adipose tissue
18
testis
17
heart right ventricle
17
muscle of trunk
17
psoas muscle
16
chorionic villus
16
layer of hippocampus
16
right atrium auricular region
16
skeletal muscle tissue
16
tibial artery
16
upper lobe of left lung
15
endocrine pancreas
15
omental fat pad
15
substantia nigra
14
Peyer's patch
14
prostate gland
14
temporal lobe
13
ascending aorta
13
cerebellum
13
frontal cortex
12
left cardiac atrium
12
left renal cortex interstitium
12
left renal pelvis
12
putamen
12
right renal pelvis
11
aorta
11
breast epithelium
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
right renal cortex interstitium
11
thoracic aorta
10
angular gyrus
10
chorion membrane
10
colonic mucosa
10
lower leg skin
10
trophoblast
10
vagina
9
cingulate gyrus
9
duodenal mucosa
9
esophagus
9
eye
9
mucosa of rectum
9
parathyroid adenoma
9
stomach smooth muscle
9
tongue
9
uterus
8
Ammon's horn
8
globus pallidus
8
limb
8
midbrain
8
muscle layer of colon
8
muscle layer of duodenum
8
occipital lobe
8
urinary bladder
7
gastroesophageal sphincter
7
right cardiac atrium
7
superior temporal gyrus
6
Brodmann (1909) area 46
6
medulla oblongata
6
middle frontal gyrus
6
pons
6
right lobe of liver
6
skin of body
6
subcutaneous abdominal adipose tissue
6
umbilical cord
5
cartilage tissue
5
cerebellar cortex
5
germinal matrix
4
amnion
4
amygdala
4
bone tissue
4
cortex of kidney
4
embryonic facial prominence
4
femur
4
hypothalamus
4
inferior parietal cortex
4
mucosa of stomach
4
nucleus accumbens
4
rectum smooth muscle tissue
4
visceral abdominal adipose tissue
3
anterior cingulate cortex
3
arm bone
3
cerebellum (Hemisphere)
3
germinal center
3
leg bone
3
prefrontal cortex
3
suprapubic skin
2
hindlimb muscle
2
muscle of leg
2
C1 segment of cervical spinal cord
2
blood
2
breast carcinoma
2
chorion
2
dorsolateral prefrontal cortex
2
endometrium cancer
2
fallopian tube
2
first pancreatic bud
2
forelimb muscle
2
gastrocnemius medialis(Muscle - Skeletal)
2
kidney epithelium
2
left ventricle myocardium
2
mammary gland
2
middle frontal area 46
2
minor salivary gland
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
2
placental basal plate
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
Date released
1
February, 2024
Software used
1
macs
Lab
1
Kyle Gaulton, UCSD
Project
1
AMP
RFA
1
AMP
month_released!
March, 2020
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR642XNX
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Immune
Lab:
Kyle Gaulton, UCSD
Project:
AMP