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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
cis-regulatory elements
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
8
primary cell
2
tissue
Biosample term
90
heart
86
stomach
81
kidney
68
lung
67
muscle of arm
63
small intestine
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
muscle of back
52
left lung
49
liver
48
thymus
45
right lung
44
islet of Langerhans
42
right kidney
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
34
heart left ventricle
34
spleen
32
adipose tissue
31
spinal cord
25
tibial nerve
24
body of pancreas
23
sigmoid colon
22
pancreas
21
coronary artery
21
ovary
21
subcutaneous adipose tissue
20
pigmented layer of retina
20
psoas muscle
19
heart right ventricle
19
right atrium auricular region
19
thyroid gland
19
tibial artery
19
transverse colon
18
gastrocnemius medialis
18
omental fat pad
18
testis
17
muscle of trunk
16
ascending aorta
16
chorionic villus
16
skeletal muscle tissue
16
upper lobe of left lung
15
endocrine pancreas
14
Peyer's patch
14
prostate gland
13
aorta
12
left cardiac atrium
12
left renal cortex interstitium
12
left renal pelvis
12
right renal pelvis
11
breast epithelium
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
right renal cortex interstitium
11
thoracic aorta
11
trophoblast
10
chorion membrane
10
colonic mucosa
10
esophagus
10
lower leg skin
10
vagina
9
duodenal mucosa
9
eye
9
mucosa of rectum
9
parathyroid adenoma
9
right lobe of liver
9
stomach smooth muscle
9
tongue
9
uterus
8
limb
8
muscle layer of colon
8
muscle layer of duodenum
8
occipital lobe
8
right cardiac atrium
8
urinary bladder
7
gastroesophageal sphincter
7
superior temporal gyrus
6
skin of body
6
subcutaneous abdominal adipose tissue
6
umbilical cord
5
C1 segment of cervical spinal cord
5
cartilage tissue
5
gastrocnemius medialis(Muscle - Skeletal)
5
germinal matrix
5
left ventricle myocardium
4
amnion
4
bone tissue
4
cortex of kidney
4
embryonic facial prominence
4
femur
4
mucosa of stomach
4
rectum smooth muscle tissue
4
visceral abdominal adipose tissue
3
arm bone
3
germinal center
3
leg bone
3
suprapubic skin
2
hindlimb muscle
2
muscle of leg
2
blood
2
breast carcinoma
2
chorion
2
endometrium cancer
2
fallopian tube
2
first pancreatic bud
2
forelimb muscle
2
kidney epithelium
2
mammary gland
2
minor salivary gland
2
pancreatic ductal cell
2
pancreatic stellate cell
2
placental basal plate
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
left kidney
1
omental fat pad
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
aorta wall
1
aortic valve
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endometrium
1
endothelial cell
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
metanephros
1
mitral valve
1
morula
1
nephron tubule
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
parietal lobe
1
precuneus cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
rectal smooth muscle tissue
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
right arm bone
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
supramarginal gyrus
1
synovial joint
1
thyroid
1
tissue-resident macrophage
Organ
2
connective tissue
2
pancreas
Date released
2
February, 2024
Software used
2
macs
Lab
2
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
organ_slims!
brain
Showing 2 of 2 results
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Download
FileSet
DSR242BFD
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Quiescent Stellate
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR972BOL
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Active Stellate
Lab:
Kyle Gaulton, UCSD
Project:
AMP