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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
40
candidate regulatory elements
21
target gene predictions
19
chromatin state
3
accessible chromatin
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
3
DNase-seq
2
RNA-seq
Available data
3
bed bed3+
1
tsv
File set status
5
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
37
monocyte
31
islet of Langerhans
27
endothelial cell
25
retina
22
macrophage
21
hepatocyte
20
pigmented layer of retina
18
fibroblast
18
kidney
17
epithelial cell of proximal tubule
17
neural progenitor cell
16
EndoC_BH1
16
glomerular endothelial cell
14
excitatory neuron
14
pancreatic ductal cell
14
regulatory T cell
13
subcutaneous adipose tissue
12
liver
12
smooth muscle cell
11
T-helper 1 cell
11
cardiomyocytes
10
B cell
10
T-helper 17 cell
10
endothelial cell of hepatic sinusoid
10
pancreatic acinar cell
10
pancreatic beta cell
10
pericyte cell
9
H1-hESC
9
T cell
9
adipose tissue
9
astrocyte
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
pancreatic alpha cell
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
8
CD8-positive, alpha-beta T cell
8
adipocyte
8
glomerular visceral epithelial cell
8
heart
7
embryonic stem cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
memory B cell
7
mesangial cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
natural killer cell
7
osteoblast
7
pancreatic delta cell
7
right atrium auricular region
7
skeletal muscle fiber
7
skeletal muscle satellite cell
7
tibial nerve
6
SGBS preadipocytes
6
T-helper 2 cell
6
coronary artery
6
frontal cortex
6
gamma-delta T cell
6
glutamatergic neuron
6
omental fat pad
6
pancreas
6
pancreatic stellate cell
6
putamen
6
tibial artery
5
T follicular helper cell
5
brain
5
caudate nucleus
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
heart left ventricle
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesenchymal stem cell
5
stomach
5
type I muscle cell
5
type II muscle cell
4
Ammon's horn
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of cardiac tissue
4
hepatic stellate cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
nephron progenitor
4
pancreatic polypeptide-secreting cell
4
spleen
4
substantia nigra
4
type II pneumocyte
3
cardiac fibroblast
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adrenal gland
3
adult endothelial progenitor cell
3
amygdala
3
anterior cingulate cortex
3
ascending aorta
3
blood cell
3
body of pancreas
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glial cell
3
hepatocyte(AFP)
3
hypothalamus
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
naive B cel
3
naive regulatory T cell
3
nucleus accumbens
3
occipital lobe
3
ovary
3
plasma cell
3
renal cortical epithelial cell
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
skin of body
3
smooth muscle cell of the coronary artery
3
spinal cord
3
testis
3
type I pneumocyte
3
uterus
Organ
5
stomach
Life stage
1
adult
Date released
3
June, 2020
1
January, 2022
1
March, 2024
Software used
3
macs
1
qTLtools
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bam
Showing 5 of 5 results
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Download
FileSet
DSR007TCR
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Stomach.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR542EVP
released
Annotation file set
: stomach eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355FEE
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Stomach from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR769DZK
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Gastric primary sample from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR936OND
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Fetal stomach from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP