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Schema
Citing CMDGA
Clear Filters
Annotation type
904
chromatin state
683
gene expression
167
differential activity
159
eQTL
74
Fine-mapped variants
16
variant allelic effects
8
accessible chromatin
4
sQTL
2
hQTL
2
variant to gene
1
histone modifications
1
meQTL
1
other
1
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
8
cis-regulatory elements
Annotation type Category
5
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
bed bed3+
528
bigWig
9
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
File set status
8
released
Genome assembly (visualization)
2
hg19
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
3
primary cell
Biosample term
adipose-derived stem cell
2
differentiating adipose-derived stem cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
glomerular endothelial cell
1
neuron cell of Hypothalamus (neuron)
1
pancreatic acinar cell
1
pancreatic ductal cell
Organ
3
epithelium
2
pancreas
1
kidney
Life stage
2
adult
Date released
4
February, 2024
3
November, 2022
1
June, 2020
Software used
8
macs
Lab
3
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
2
Kyle Gaulton, UCSD
Project
8
AMP
RFA
5
AMP
3
AMP2
files.file_type!
bed bed3+
biosample_term_name!
adipose-derived stem cell
Showing 8 of 8 results
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FileSet
DSR059ZYM
released
Annotation file set
: Accessible chromatin of differentiating adipose-derived stem cells, 8 hour
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR075MLB
released
Annotation file set
: Accessible chromatin of differentiating adipose-derived stem cells, 2 hour
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR593BUS
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Hypothalamic Neuron).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR817DDX
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Hypothalamic Progenitor).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR885BSZ
released
Annotation file set
: Accessible chromatin annotation for Kidney HRGEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR553FGJ
released
Annotation file set
: pancreatic ductal cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR294OTS
released
Annotation file set
: pancreatic acinar cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP