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Annotation type
6
eQTL
1
pQTL
Annotation Category
7
Genetic variant effects
Annotation type Category
6
RNA-seq
1
Expression arrays
1
quantitative proteomics
Available data
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
3
cartilage tissue
2
islet of Langerhans
1
subcutaneous adipose tissue
1
synovial joint
Organ
4
connective tissue
2
pancreas
1
adipose tissue
Life stage
6
adult
Date released
5
August, 2021
2
February, 2021
Software used
904
chromhmm
719
r
115
deseq2
109
qTLtools
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
16
deltasvm
13
macs
12
deeptools
12
samtools
12
umitools
9
limix
9
salmon
8
matrix-eQTL
7
fastqtl
5
unknown
4
peer
3
mach2qtl
3
sqtlseeker
2
emmax
1
altius-index
1
bimbam
1
haploview
1
minfi
1
snap
Lab
4
ITG
2
AMP-T2D consortium
1
Karen Mohlke, UNC
Project
4
ITG
3
AMP
RFA
4
ITG
3
AMP
files.file_type!
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Showing 7 of 7 results
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FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR559WKO
released
Annotation file set
: eQTL annotation of islet of Langerhans from PMID:28132686
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR474VCE
released
Annotation file set
: eQTL of synovial tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR376WYD
released
Annotation file set
: eQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR276XRX
released
Annotation file set
: eQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR023QMR
released
Annotation file set
: Pancreatic islet eQTL summary statistics from the INSPIRE consortium
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR965YTD
released
Annotation file set
: METSIM RNAseq local eQTLs – all results, including non-significant cis-eQTLs
Lab:
Karen Mohlke, UNC
Project:
AMP