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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
chromatin state
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
ChIP-seq
1
DNase-seq
Available data
bed bed3+
4
bed bed9
2
bigBed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
17
epithelial cell of proximal tubule
16
glomerular endothelial cell
15
hepatocyte
11
EndoC_BH1
10
endothelial cell
10
pancreatic ductal cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
pancreatic acinar cell
6
glomerular visceral epithelial cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Transitional Principal-Intercalated Cell
5
endothelial cell of umbilical vein
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
4
endothelial cell of hepatic sinusoid
4
foreskin keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
3
S-shaped body
3
hepatocyte(AFP)
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney tubule cell
3
mammary gland epithelial cell
2
breast epithelium
2
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
epithelial cell of prostate
2
esophagus squamous epithelium
2
keratinocyte
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
myoepithelial cell of mammary gland
2
pancreatic polypeptide-secreting cell
2
renal cortical epithelial cell
2
renal vesicle
1
brain microvascular endothelial cell
1
breast - mammary tissue
1
cholangiocyte
1
choroid plexus epithelial cell
1
colon epithelial cell
1
endothelial cell of coronary artery
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of distal tubule
1
epithelial cell of esophagus
1
esophagus - mucosa
1
intermediate endothelial cell
1
iris pigment epithelial cell
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
luminal epithelial cell of mammary gland
1
lung microvascular endothelial cell
1
meso-epithelial cell
1
non-pigmented ciliary epithelial cell
1
proximal tubule
1
pulmonary artery endothelial cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal glomerulus
1
renal principal cell
1
retinal pigment epithelial cell
1
ureteric bud
Organ
5
blood vessel
5
epithelium
5
vasculature
5
vein
Life stage
3
newborn
Date released
2
January, 2020
2
September, 2022
1
May, 2020
Software used
4
chromhmm
1
deltasvm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bed bed3+
Showing 5 of 5 results
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Download
FileSet
DSR660JUZ
released
Annotation file set
: Chromatin states for BSS00298 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR550HDB
released
Annotation file set
: Chromatin states for BSS00296 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR088CRI
released
Annotation file set
: Variant allelic effects of endothelial cell of umbilical vein ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR214PMG
released
Annotation file set
: ChromHMM 18-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772SPX
released
Annotation file set
: ChromHMM 15-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP