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Schema
Citing CMDGA
Clear Filters
Annotation type
1
chromatin state
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
RNA-seq
Available data
bed bed3+
1
bed bed9
1
bigWig
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
28
islet of Langerhans
24
heart
23
kidney
21
brain
21
monocyte
21
stomach
18
A549
18
lung
17
liver
16
adrenal gland
16
epithelial cell of proximal tubule
16
induced pluripotent stem cell
16
muscle of arm
16
small intestine
15
glomerular endothelial cell
15
muscle of leg
15
placenta
14
hepatocyte
14
subcutaneous adipose tissue
13
large intestine
13
left lung
13
muscle of back
12
neural progenitor cell
11
EndoC_BH1
11
adipose tissue
11
cardiomyocytes
11
regulatory T cell
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
T-helper 1 cell
10
body of pancreas
10
caudate nucleus
10
common myeloid progenitor, CD34-positive
10
endothelial cell
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
9
cerebellum
9
coronary artery
9
frontal cortex
9
left kidney
9
macrophage
9
omental fat pad
9
putamen
9
renal cortex interstitium
9
renal pelvis
9
right atrium auricular region
9
substantia nigra
9
tibial artery
8
B cell
8
T-helper 17 cell
8
ascending aorta
8
spinal cord
8
spleen
7
embryonic stem cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
pancreatic acinar cell
7
pancreatic ductal cell
6
Ammon's horn
6
K562
6
T-helper 2 cell
6
amygdala
6
anterior cingulate cortex
6
glomerular visceral epithelial cell
6
heart right ventricle
6
hypothalamus
6
kidney interstitial cell
6
lymphoblastoid cell line
6
natural killer cell
6
nucleus accumbens
6
ovary
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
right lobe of liver
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD8-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
aorta
5
cerebellum (Hemisphere)
5
endothelial cell of umbilical vein
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mesangial cell
5
mononuclear cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic stellate cell
5
retina
5
sigmoid colon
5
temporal lobe
5
testis
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
CD8-positive, alpha-beta T cell
4
angular gyrus
4
bone tissue
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of hepatic sinusoid
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mesenchymal stem cell
4
muscle of trunk
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
neutrophil
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
psoas muscle
4
right cardiac atrium
4
skeletal muscle satellite cell
4
skeletal muscle tissue
4
skin of body
4
vagina
4
visceral abdominal adipose tissue
3
CD14-positive monocyte
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
Cycling Mononuclear Phagocyte
3
HeLa-S3
3
Mast Cell
3
Peyer's patch
3
S-shaped body
3
T follicular helper cell
3
adipocyte
3
adult endothelial progenitor cell
3
blood cell
Life stage
2
adult
unknown
Date released
1
February, 2020
1
September, 2022
Software used
1
chromhmm
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
files.file_type!
bed bed3+
relevant_life_stage!
unknown
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR584RLR
released
Annotation file set
: Chromatin states for BSS01574 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR846HCI
released
Annotation file set
: Gene expression levels of Skeletal muscle myoblast cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP