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Schema
Citing CMDGA
Clear Filters
Annotation type
4
chromatin state
1
gene expression
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
Annotation type Category
4
ChIP-seq
1
RNA-seq
Available data
bed bed3+
4
bed bed9
2
bigBed bed9
1
tsv
File set status
5
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
26
islet of Langerhans
24
heart
23
kidney
21
brain
21
monocyte
21
stomach
18
A549
18
lung
17
epithelial cell of proximal tubule
17
liver
16
adrenal gland
16
glomerular endothelial cell
16
induced pluripotent stem cell
16
muscle of arm
16
small intestine
15
muscle of leg
15
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
adipose tissue
12
neural progenitor cell
12
regulatory T cell
11
EndoC_BH1
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
hepatocyte
11
right kidney
11
right lung
11
subcutaneous adipose tissue
11
thymus
10
B cell
10
endothelial cell
10
heart left ventricle
10
pancreatic ductal cell
9
CD4-positive, alpha-beta memory T cell
9
H1-hESC
9
extended pluripotent stem (EPS) cells
9
left kidney
9
macrophage
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
8
spinal cord
8
spleen
8
tibial nerve
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
body of pancreas
7
caudate nucleus
7
embryonic stem cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
pancreatic acinar cell
6
K562
6
T cell
6
cerebellum
6
coronary artery
6
frontal cortex
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
natural killer cell
6
neutrophil
6
omental fat pad
6
ovary
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
putamen
6
right atrium auricular region
6
skeletal muscle tissue
6
substantia nigra
6
tibial artery
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
aorta
5
ascending aorta
5
endothelial cell of umbilical vein
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic stellate cell
5
retina
5
sigmoid colon
5
temporal lobe
5
testis
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
adipocyte
4
angular gyrus
4
bone tissue
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mesenchymal stem cell
4
muscle of trunk
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
psoas muscle
4
right cardiac atrium
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skin of body
4
vagina
4
visceral abdominal adipose tissue
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
HeLa-S3
3
Mast Cell
3
Peyer's patch
3
S-shaped body
3
T follicular helper cell
3
adult endothelial progenitor cell
3
amygdala
3
anterior cingulate cortex
3
blood cell
3
cardiac precursors (cardiac muscle cell)
3
cardiomyocytes (cardiac muscle cell)
3
cartilage tissue
Organ
5
brain
Life stage
4
adult
1
fetal
Date released
2
May, 2019
2
September, 2022
1
February, 2020
Software used
4
chromhmm
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bed bed3+
month_released!
March, 2020
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR845QCJ
released
Annotation file set
: Chromatin states for BSS01714 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR518MEA
released
Annotation file set
: Chromatin states for BSS01712 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR783EQK
released
Annotation file set
: Gene expression levels of Brain temporal lobe from RNA-seq (ENCODE) fetal
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR708XYC
released
Annotation file set
: ChromHMM 18-state model for temporal lobe from ENCODE ChIP-seq data. ROADMAP Brain Inferior Temporal Lobe Annotation
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR097ASI
released
Annotation file set
: ChromHMM 15-state model for temporal lobe from ENCODE ChIP-seq data. ROADMAP Brain Inferior Temporal Lobe Annotation
Lab:
AMP-T2D consortium
Project:
AMP