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Citing CMDGA
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Annotation type
1671
candidate regulatory elements
1357
target gene predictions
976
histone modifications
910
chromatin state
905
accessible chromatin
816
binding sites
124
variant allelic effects
72
Fine-mapped variants
63
eQTL
12
gene expression
6
caQTL
5
hQTL
3
meQTL
3
pQTL
3
sQTL
2
other
2
variant to gene
Annotation Category
6
Genetic variant effects
Annotation type Category
3
RNA-seq
3
quantitative proteomics
1
Expression arrays
Available data
3
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
4
tissue
2
primary cell
Biosample term
2
cartilage tissue
1
cerebrospinal fluid
1
islet of Langerhans
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
2
connective tissue
1
bodily fluid
1
pancreas
Life stage
6
adult
Date released
4
August, 2021
2
May, 2021
Software used
2
fastqtl
2
limix
2
peer
2
sqtlseeker
1
matrix-eQTL
1
r
Lab
4
AMP-T2D consortium
2
ITG
Project
4
AMP
2
ITG
RFA
4
AMP
2
ITG
files.file_type!
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Showing 6 of 6 results
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FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP