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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
109
monocyte
65
heart
65
stomach
60
HeLa-S3
57
kidney
51
brain
51
muscle of arm
50
lung
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
44
placenta
43
H1-hESC
43
large intestine
43
muscle of leg
42
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
36
thymus
35
neural progenitor cell
34
B cell
34
retina
34
right lung
33
K562
31
hematopoietic multipotent progenitor cell
31
liver
31
renal cortex interstitium
31
renal pelvis
31
right kidney
29
endothelial cell
28
fibroblast
27
CD14-positive monocyte
27
left kidney
25
spinal cord
25
spleen
24
heart left ventricle
23
CD4-positive, alpha-beta memory T cell
22
macrophage
22
smooth muscle cell
21
adipocyte
21
hepatocyte
21
pericyte cell
20
pigmented layer of retina
19
HFFc6
19
adipose tissue
18
MCF-7
17
T cell
17
foreskin keratinocyte
17
pancreas
17
sigmoid colon
17
trophoblast cell
16
natural killer cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
ovary
15
psoas muscle
15
regulatory T cell
14
astrocyte
14
gastrocnemius medialis
14
islet of Langerhans
14
keratinocyte
14
tibial nerve
14
transverse colon
13
GM12878
13
HepG2
13
body of pancreas
13
endothelial cell of umbilical vein
13
foreskin fibroblast
13
mesenchymal stem cell
13
mononuclear cell
13
pancreatic ductal cell
13
thyroid gland
12
CD4-positive, alpha-beta T cell
12
cardiac muscle cell
12
coronary artery
12
excitatory neuron
12
fibroblast of cardiac tissue
12
heart right ventricle
12
muscle of trunk
12
pancreatic beta cell
12
retinal pigment epithelial cell
11
EndoC_BH1
11
Peyer's patch
11
T-helper 1 cell
11
breast cancer cell
11
caudate nucleus
11
chorionic villus
11
testis
11
upper lobe of left lung
10
endocrine pancreas
10
fibroblast of lung
10
layer of hippocampus
10
pancreatic acinar cell
10
pancreatic alpha cell
10
right renal pelvis
10
skeletal muscle myoblast
10
skeletal muscle tissue
9
Rhabdomyosarcoma
9
T-helper 2 cell
9
left renal cortex interstitium
9
left renal pelvis
9
lymphocyte
9
mammary gland epithelial cell
9
neurosphere
9
osteoblast
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
tibial artery
8
T-helper 17 cell
8
breast epithelium
8
gastric cancer cell
8
left cardiac atrium
8
mammary epithelial cell
8
pituitary stalk
8
right atrium auricular region
8
skin fibroblast
8
temporal lobe
7
22Rv1
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
aorta
7
bronchial epithelial cell
7
colonic mucosa
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
fibroblast of dermis
7
kidney tubule cell
7
lower leg skin
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuroblastoma cell
7
neutrophil
7
omental fat pad
7
prostate gland
7
substantia nigra
7
thoracic aorta
7
trophoblast
6
Ammon's horn
6
Chondroid Chordoma
6
HAP-1
6
HEK293
6
HT-29
6
IMR-90
6
MM.1S
6
NAMALWA cell
6
OCI-LY7
6
PC-9
6
SGBS preadipocytes
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
ascending aorta
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
erythroblast
6
esophagus
6
eye
6
immortal human breast epithelial cell line cell
6
mesendoderm
6
neuronal stem cell
6
parathyroid adenoma
6
tongue
5
cardiac fibroblast
5
CD1c-positive myeloid dendritic cell
5
CMK
5
CyT49
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19240
5
GM23248
5
H7-hESC
5
HCT116
5
HL-60
5
HUES8
5
Jurkat
5
KARPAS-422 cell
5
LHCN-M2
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
MG63
5
PC-3
5
RWPE1
5
SW480
5
chorion membrane
5
dermis blood vessel endothelial cell
5
embryonic stem cell
5
enterocyte
5
frontal cortex
5
glomerular visceral epithelial cell
5
glutamatergic neuron
5
limb
5
mucosa of rectum
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
files.file_type!
bed bed9+
annotation_type!
binding sites
Showing 7 of 7 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP