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Citing CMDGA
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Annotation type
20
accessible chromatin
15
target gene predictions
13
candidate regulatory elements
11
gene expression
9
chromatin state
8
eQTL
3
binding sites
3
caQTL
3
histone modifications
2
variant allelic effects
1
differential activity
Annotation Category
3
Genetic variant effects
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
2
CD4-positive helper T cell
2
endothelial cell
1
coronary artery
1
fibroblast of the aortic adventitia
1
liver
1
macrophage
1
mesenchymal stem cell
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
type I muscle cell
1
type II muscle cell
Organ
2
epithelium
1
liver
Date released
1
February, 2023
1
May, 2022
1
October, 2022
Software used
3
rasqual
2
eigenmt
Lab
1
AMP-T2D consortium
1
Karen Mohlke, UNC
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
files.file_type!
bed bed9+
month_released!
March, 2020
Showing 3 of 3 results
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FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP