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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
131
monocyte
67
heart
67
stomach
64
kidney
61
HeLa-S3
54
brain
53
H1-hESC
52
lung
51
CD8-positive, alpha-beta T cell
50
muscle of arm
48
adrenal gland
48
small intestine
47
neural progenitor cell
46
placenta
44
A549
44
islet of Langerhans
43
large intestine
43
muscle of leg
42
liver
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
endothelial cell
39
left lung
37
thymus
36
B cell
36
retina
35
K562
34
right lung
33
hematopoietic multipotent progenitor cell
33
hepatocyte
31
right kidney
30
renal cortex interstitium
30
renal pelvis
29
macrophage
28
spinal cord
28
spleen
27
CD14-positive monocyte
27
left kidney
25
fibroblast
25
regulatory T cell
24
adipose tissue
24
heart left ventricle
24
pancreatic ductal cell
23
CD4-positive, alpha-beta memory T cell
22
EndoC_BH1
22
adipocyte
22
smooth muscle cell
21
MCF-7
21
epithelial cell of proximal tubule
21
pericyte cell
20
breast cancer cell
20
natural killer cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
T-helper 1 cell
19
body of pancreas
19
glomerular endothelial cell
18
HFFc6
18
T-helper 17 cell
18
caudate nucleus
18
foreskin keratinocyte
18
keratinocyte
18
tibial nerve
17
foreskin fibroblast
17
ovary
17
pancreas
17
pancreatic beta cell
17
sigmoid colon
17
trophoblast cell
16
HepG2
16
T cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
osteoblast
16
pancreatic acinar cell
16
pancreatic alpha cell
16
substantia nigra
15
CD4-positive, alpha-beta T cell
15
CD8-positive, alpha-beta memory T cell
15
coronary artery
15
mesenchymal stem cell
15
omental fat pad
15
psoas muscle
15
retinal pigment epithelial cell
15
transverse colon
14
GM12878
14
cardiac muscle cell
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mononuclear cell
14
pancreatic delta cell
14
right atrium auricular region
14
testis
14
thyroid gland
13
H9
13
T-helper 2 cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
layer of hippocampus
13
neutrophil
13
skeletal muscle tissue
13
upper lobe of left lung
12
cerebellum
12
embryonic stem cell
12
fibroblast of lung
12
frontal cortex
12
heart right ventricle
12
lymphoblastoid cell line
12
mammary epithelial cell
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
prostate gland
12
putamen
12
skeletal muscle myoblast
12
tibial artery
11
Ammon's horn
11
ascending aorta
11
chorionic villus
11
erythroblast
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
mammary gland epithelial cell
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
left renal cortex interstitium
9
liposarcoma
9
lymphocyte
9
neurosphere
9
right renal pelvis
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
breast epithelium
8
esophagus
8
fibroblast cell line
8
left cardiac atrium
8
pituitary stalk
8
temporal lobe
8
trophoblast
7
CD4-positive helper T cell
7
GM12865
7
HEK293
7
amygdala
7
choroid plexus epithelial cell
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
hepatic stellate cell
7
kidney tubule cell
7
left renal pelvis
7
lower leg skin
7
mature neutrophil
7
memory B cell
7
mesendoderm
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
Chondroid Chordoma
6
GM06990
6
HAP-1
6
HT-29
6
HUES8
6
IMR-90
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
anterior cingulate cortex
6
cardiomyocytes (cardiac muscle cell)
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
files.file_type!
bed bed9
annotation_type!
variant allelic effects
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP