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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
69
heart
67
stomach
65
kidney
55
brain
52
lung
51
CD8-positive, alpha-beta T cell
51
muscle of arm
48
adrenal gland
48
small intestine
46
placenta
45
islet of Langerhans
43
large intestine
43
muscle of leg
43
neural progenitor cell
42
liver
41
common myeloid progenitor, CD34-positive
41
endothelial cell
41
muscle of back
39
left lung
37
retina
37
thymus
36
B cell
35
hepatocyte
34
right lung
33
hematopoietic multipotent progenitor cell
32
right kidney
31
fibroblast
31
renal cortex interstitium
31
renal pelvis
28
spleen
27
CD14-positive monocyte
27
left kidney
27
macrophage
26
adipose tissue
26
heart left ventricle
25
adipocyte
25
regulatory T cell
24
pancreatic ductal cell
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
23
spinal cord
22
epithelial cell of proximal tubule
21
pericyte cell
21
subcutaneous adipose tissue
21
tibial nerve
20
T-helper 1 cell
20
body of pancreas
20
glomerular endothelial cell
20
natural killer cell
20
pigmented layer of retina
19
T cell
19
caudate nucleus
19
pancreas
18
T-helper 17 cell
18
coronary artery
18
foreskin keratinocyte
18
pancreatic beta cell
17
ovary
17
pancreatic alpha cell
17
right atrium auricular region
17
sigmoid colon
17
trophoblast cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
osteoblast
16
substantia nigra
15
CD4-positive, alpha-beta T cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin fibroblast
15
keratinocyte
15
mesenchymal stem cell
15
omental fat pad
15
pancreatic acinar cell
15
pancreatic delta cell
15
psoas muscle
15
retinal pigment epithelial cell
15
transverse colon
14
T-helper 2 cell
14
cerebellum
14
excitatory neuron
14
frontal cortex
14
gastrocnemius medialis
14
heart right ventricle
14
mononuclear cell
14
testis
14
thyroid gland
14
tibial artery
13
ascending aorta
13
cardiac muscle cell
13
fibroblast of lung
13
layer of hippocampus
13
neutrophil
13
putamen
13
skeletal muscle myoblast
13
skeletal muscle tissue
13
upper lobe of left lung
12
chorionic villus
12
mammary epithelial cell
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
prostate gland
11
Ammon's horn
11
Peyer's patch
11
cardiomyocytes
11
endocrine pancreas
11
erythroblast
11
mammary gland epithelial cell
10
bronchial epithelial cell
10
embryonic stem cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
neuronal stem cell
10
pancreatic stellate cell
10
right renal pelvis
10
skeletal muscle satellite cell
9
aorta
9
breast epithelium
9
esophagus muscularis mucosa
9
esophagus squamous epithelium
9
extended pluripotent stem (EPS) cells
9
fibroblast of cardiac tissue
9
fibroblast of dermis
9
induced pluripotent stem cell
9
left cardiac atrium
9
left renal pelvis
9
neurosphere
8
T-cell acute lymphoblastic leukemia
8
cardiomyocytes (cardiac muscle cell)
8
colonic mucosa
8
dermis blood vessel endothelial cell
8
esophagus
8
foreskin melanocyte
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
skin fibroblast
8
temporal lobe
8
trophoblast
7
CD4-positive helper T cell
7
amygdala
7
chorion membrane
7
cingulate gyrus
7
dendritic cell
7
duodenal mucosa
7
epithelial cell of prostate
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
globus pallidus
7
glutamatergic neuron
7
hepatic stellate cell
7
hypothalamus
7
kidney tubule cell
7
lower leg skin
7
mature neutrophil
7
memory B cell
7
mesendoderm
7
thoracic aorta
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
angular gyrus
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
endodermal cell
6
enterocyte
6
eye
6
fibroblast of breast
6
fibroblast of villous mesenchyme
6
gamma-delta T cell
6
kidney glomerular epithelial cell
6
kidney loop of Henle thin ascending limb epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
plasma cell
6
renal cortical epithelial cell
6
right renal cortex interstitium
6
tongue
6
type I muscle cell
6
uterus
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
files.file_type!
bed bed9
biosample_type!
cell line
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP