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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
45
islet of Langerhans
44
CD8-positive, alpha-beta T cell
41
endothelial cell
38
neural progenitor cell
36
kidney
32
heart
32
hepatocyte
31
fibroblast
31
retina
29
liver
28
macrophage
27
stomach
26
brain
24
pancreatic ductal cell
22
B cell
22
smooth muscle cell
21
adipocyte
20
adrenal gland
20
epithelial cell of proximal tubule
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
adipose tissue
19
lung
19
placenta
19
regulatory T cell
19
subcutaneous adipose tissue
18
glomerular endothelial cell
18
muscle of arm
18
pancreatic beta cell
18
small intestine
17
pancreatic alpha cell
17
thymus
16
endothelial cell of hepatic sinusoid
16
large intestine
15
T cell
15
coronary artery
15
heart left ventricle
15
muscle of leg
15
pancreatic acinar cell
15
pancreatic delta cell
14
T-helper 1 cell
14
astrocyte
14
caudate nucleus
14
common myeloid progenitor, CD34-positive
14
excitatory neuron
14
hematopoietic multipotent progenitor cell
14
natural killer cell
14
osteoblast
14
pancreas
14
tibial nerve
13
T-helper 17 cell
13
left lung
13
muscle of back
13
retinal pigment epithelial cell
13
right atrium auricular region
12
body of pancreas
12
frontal cortex
12
keratinocyte
12
mesenchymal stem cell
12
renal pelvis
12
right kidney
12
spleen
12
tibial artery
11
cardiomyocytes
11
cerebellum
11
erythroblast
10
embryonic stem cell
10
endothelial cell of umbilical vein
10
mammary epithelial cell
10
mammary gland epithelial cell
10
omental fat pad
10
pancreatic stellate cell
10
putamen
10
renal cortex interstitium
10
right lung
10
spinal cord
10
substantia nigra
9
Ammon's horn
9
CD4-positive, alpha-beta memory T cell
9
T-helper 2 cell
9
ascending aorta
9
extended pluripotent stem (EPS) cells
9
foreskin fibroblast
9
induced pluripotent stem cell
9
left cardiac atrium
9
left kidney
9
mature neutrophil
9
memory B cell
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
ovary
9
skeletal muscle myoblast
8
T-cell acute lymphoblastic leukemia
8
cardiomyocytes (cardiac muscle cell)
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
heart right ventricle
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
neutrophil
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
skeletal muscle satellite cell
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
amygdala
7
cardiac muscle cell
7
dendritic cell
7
fibroblast of lung
7
foreskin keratinocyte
7
hepatic stellate cell
7
hypothalamus
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
layer of hippocampus
7
mesangial cell
7
neuroblastoma cell line
7
neuronal stem cell
7
nucleus accumbens
7
psoas muscle
7
sigmoid colon
6
alternatively activated macrophage
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of cardiac tissue
6
gamma-delta T cell
6
gastrocnemius medialis
6
mast cell
6
mesendoderm
6
midbrain
6
mononuclear cell
6
plasma cell
6
skeletal muscle tissue
6
testis
6
trophoblast cell
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SGBS preadipocytes
5
T Cell
5
T follicular helper cell
Life stage
1
embryonic
Date released
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
3
macs
1
abc
1
nospecificsoft_customcode
1
r
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
files.file_type!
bed bed9
biosample_type!
cell line
annotation_type!
candidate regulatory elements
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP