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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
128
monocyte
67
heart
67
stomach
64
kidney
61
HeLa-S3
54
brain
53
H1-hESC
52
lung
50
muscle of arm
48
CD8-positive, alpha-beta T cell
48
adrenal gland
48
small intestine
47
neural progenitor cell
46
placenta
44
A549
43
large intestine
43
muscle of leg
42
islet of Langerhans
42
liver
41
common myeloid progenitor, CD34-positive
41
endothelial cell
41
muscle of back
39
left lung
36
retina
36
thymus
35
K562
34
hepatocyte
34
right lung
33
B cell
33
hematopoietic multipotent progenitor cell
32
fibroblast
31
macrophage
30
renal cortex interstitium
30
renal pelvis
30
right kidney
28
spinal cord
28
spleen
27
CD14-positive monocyte
27
left kidney
25
pancreatic ductal cell
24
adipocyte
24
heart left ventricle
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
23
regulatory T cell
22
EndoC_BH1
21
MCF-7
21
epithelial cell of proximal tubule
21
pericyte cell
20
breast cancer cell
20
pigmented layer of retina
19
body of pancreas
19
glomerular endothelial cell
19
keratinocyte
19
natural killer cell
18
HFFc6
18
T cell
18
caudate nucleus
18
foreskin keratinocyte
18
pancreatic beta cell
18
tibial nerve
17
T-helper 1 cell
17
foreskin fibroblast
17
ovary
17
pancreas
17
pancreatic acinar cell
17
pancreatic alpha cell
17
sigmoid colon
17
trophoblast cell
16
HepG2
16
T-helper 17 cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
osteoblast
16
substantia nigra
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
cardiac muscle cell
15
coronary artery
15
mesenchymal stem cell
15
pancreatic delta cell
15
psoas muscle
15
retinal pigment epithelial cell
15
transverse colon
14
gastrocnemius medialis
14
mononuclear cell
14
right atrium auricular region
14
testis
14
thyroid gland
13
CD4-positive, alpha-beta T cell
13
H9
13
endothelial cell of umbilical vein
13
excitatory neuron
13
fibroblast of cardiac tissue
13
layer of hippocampus
13
skeletal muscle tissue
13
upper lobe of left lung
12
cerebellum
12
embryonic stem cell
12
fibroblast of lung
12
frontal cortex
12
heart right ventricle
12
lymphoblastoid cell line
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
neutrophil
12
prostate gland
12
putamen
12
tibial artery
11
Ammon's horn
11
ascending aorta
11
chorionic villus
11
mammary gland epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
skeletal muscle myoblast
10
Peyer's patch
10
Rhabdomyosarcoma
10
T-helper 2 cell
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
right renal pelvis
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
breast epithelium
8
esophagus
8
fibroblast cell line
8
left cardiac atrium
8
pituitary stalk
8
skeletal muscle fiber
8
temporal lobe
8
trophoblast
7
CD4-positive helper T cell
7
GM12865
7
HEK293
7
amygdala
7
choroid plexus epithelial cell
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
hepatic stellate cell
7
kidney tubule cell
7
left renal cortex interstitium
7
left renal pelvis
7
lower leg skin
7
mature neutrophil
7
mesendoderm
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
HAP-1
6
HT-29
6
HUES8
6
IMR-90
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
anterior cingulate cortex
6
cardiomyocytes (cardiac muscle cell)
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
nucleus accumbens
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
files.file_type!
bed bed9
month_released!
May, 2020
organ_slims!
adipose tissue
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP