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Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
8
accessible chromatin
4
histone modifications
2
target gene predictions
2
variant allelic effects
1
binding sites
1
candidate regulatory elements
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ChIP-seq
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
in vitro differentiated cells
Biosample term
21
stomach
20
heart
18
muscle of arm
17
lung
16
kidney
15
large intestine
15
muscle of back
14
adrenal gland
14
brain
14
common myeloid progenitor, CD34-positive
14
muscle of leg
14
small intestine
13
left lung
12
placenta
12
renal cortex interstitium
11
renal pelvis
11
right kidney
11
right lung
9
hematopoietic multipotent progenitor cell
9
left kidney
9
spleen
9
thymus
8
CD4-positive, alpha-beta T cell
8
heart left ventricle
7
CD8-positive, alpha-beta T cell
7
cardiac muscle cell
7
foreskin keratinocyte
7
spinal cord
6
B cell
6
H9
6
fibroblast
6
liver
5
CD4-positive, alpha-beta memory T cell
5
body of pancreas
5
endothelial cell of umbilical vein
5
foreskin fibroblast
5
left renal cortex interstitium
5
left renal pelvis
5
right renal pelvis
5
sigmoid colon
5
subcutaneous abdominal adipose tissue
5
tibial nerve
4
CD14-positive monocyte
4
MCF-7
4
Peyer's patch
4
T-cell
4
WI38
4
chorionic villus
4
dermis blood vessel endothelial cell
4
esophagus squamous epithelium
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
heart right ventricle
4
lower leg skin
4
muscle of trunk
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neurosphere
4
ovary
4
pancreas
4
peripheral blood mononuclear cell
4
retina
4
right renal cortex interstitium
4
testis
4
thyroid gland
4
transverse colon
4
trophoblast cell
4
upper lobe of left lung
3
A549
3
MCF 10A
3
T-helper 1 cell
3
adipocyte
3
ascending aorta
3
breast epithelium
3
cardiac fibroblast
3
caudate nucleus
3
coronary artery
3
endocrine pancreas
3
enterocyte
3
epithelial cell of esophagus
3
esophagus muscularis mucosa
3
fibroblast of lung
3
foreskin melanocyte
3
hepatocyte
3
layer of hippocampus
3
macrophage
3
mammary epithelial cell
3
mesodermal cell
3
myofibroblast cell
3
natural killer cell
3
omental fat pad
3
parathyroid adenoma
3
psoas muscle
3
right atrium auricular region
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
smooth muscle cell
3
subcutaneous adipose tissue
3
substantia nigra
3
suprapubic skin
3
temporal lobe
3
thoracic aorta
3
tibial artery
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
AG10803
2
HEK293
2
HeLa-S3
2
LNCAP
2
MIN6
2
NAMALWA
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
Schwann cell
2
T cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
angular gyrus
2
aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
brain pericyte
2
bronchial epithelial cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis microvascular lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
endothelial cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus
2
eye
2
fibroblast of breast
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
goblet cell
2
keratinocyte
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
left cardiac atrium
2
lung microvascular endothelial cell
2
mesenchymal stem cell
2
middle frontal area 46
2
middle frontal gyrus
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neural cell
2
neuroepithelial stem cell
2
neuronal stem cell
2
neutrophil
2
placental basal plate
2
prostate gland
2
putamen
2
regulatory T cell
2
renal cortical epithelial cell
2
skeletal muscle cell
2
skeletal muscle fiber
2
smooth muscle cell of the brain vasculature
2
stomach smooth muscle
2
tongue
2
trophoblast
2
uterus
2
vagina
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
BE2C
1
BJ
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta memory T cell
1
CMK
1
Caco-2
1
Caki2
1
D721Med
Organ
3
epithelium
3
liver
Life stage
1
embryonic
Date released
September, 2022
1
February, 2021
1
February, 2024
1
May, 2020
Software used
2
deltasvm
1
encode-ccres
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
RFA
3
AMP
files.file_type!
bed bed9
month_released!
September, 2022
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR731RPD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE hepatocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR179RJC
released
Annotation file set
: Variant allelic effects annotation of Hepatocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR488RFU
released
Annotation file set
: Genetic variants with deltaSVM predictions in liver hepatocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP