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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
3
snATAC-seq
1
snRNA-seq
Available data
3
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
in vitro differentiated cells
4
primary cell
Biosample term
128
monocyte
55
HeLa-S3
50
H1-hESC
44
islet of Langerhans
41
CD8-positive, alpha-beta T cell
40
endothelial cell
34
kidney
30
fibroblast
30
macrophage
28
heart
28
retina
27
hepatocyte
27
liver
26
K562
25
brain
23
EndoC_BH1
22
stomach
21
A549
20
breast cancer cell
20
pancreatic ductal cell
20
pericyte cell
20
pigmented layer of retina
20
smooth muscle cell
19
HFFc6
19
lung
19
subcutaneous adipose tissue
18
epithelial cell of proximal tubule
18
placenta
18
regulatory T cell
17
B cell
17
adipose tissue
17
pancreatic beta cell
17
small intestine
16
adrenal gland
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
15
glomerular endothelial cell
15
keratinocyte
15
muscle of arm
15
muscle of leg
15
pancreatic alpha cell
14
T cell
14
heart left ventricle
14
thymus
13
astrocyte
13
large intestine
13
muscle of back
13
pancreatic delta cell
12
HepG2
12
T-helper 1 cell
12
T-helper 17 cell
12
common myeloid progenitor, CD34-positive
12
coronary artery
12
left lung
12
neuroblastoma cell
12
tibial nerve
11
GM12878
11
excitatory neuron
11
lymphoblastoid cell line
10
gastric cancer cell
10
pancreatic stellate cell
10
right atrium auricular region
10
right lung
10
skeletal muscle satellite cell
10
spinal cord
10
substantia nigra
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
Rhabdomyosarcoma
9
caudate nucleus
9
erythroblast
9
liposarcoma
9
natural killer cell
9
omental fat pad
9
osteoblast
9
spleen
9
tibial artery
8
B-lymphoblastoid cell line
8
cerebellum
8
fibroblast cell line
8
frontal cortex
8
neutrophil
8
renal pelvis
8
right kidney
8
skeletal muscle fiber
7
Ammon's horn
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
H9
7
T-helper 2 cell
7
amygdala
7
aorta
7
ascending aorta
7
body of pancreas
7
endothelial cell of umbilical vein
7
fibroblast of cardiac tissue
7
glomerular visceral epithelial cell
7
left kidney
7
lymphocyte
7
mature neutrophil
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
pancreas
7
putamen
7
temporal lobe
6
anterior cingulate cortex
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
hypothalamus
6
iPSC derived cell line
6
induced pluripotent stem cell
6
left cardiac atrium
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
plasma cell
6
renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
type I muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Chondroid Chordoma
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM19238
5
GM19239
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Proximal Tubule Epithelial Cell Segment 3
5
cardiac muscle cell
5
enterocyte
5
esophageal adenocarcinoma
5
foreskin fibroblast
5
glutamatergic neuron
5
heart right ventricle
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary epithelial cell
5
mammary gland epithelial cell
5
mast cell
5
mesangial cell
5
mesenchymal stem cell
5
prostate cancer cell line
5
prostate gland
5
psoas muscle
5
smooth muscle cell of the coronary artery
5
testis
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD14-positive monocyte
4
Caco-2 cell
Organ
4
connective tissue
Date released
3
February, 2024
1
November, 2021
Software used
2
macs
1
deeptools
1
deltasvm
1
r
1
samtools
1
umitools
Lab
2
Bing Ren, UCSD
2
Stephen Parker, UMich
Project
3
AMP
1
ENCODE
RFA
2
AMP2
1
AMP
1
ENCODE3
files.file_type!
bed gappedPeak
annotation_type_category!
DNase-seq
biosample_type!
in vitro differentiated cells
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP