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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
target gene predictions
2
chromatin state
1
accessible chromatin
1
binding sites
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
4
ChIP-seq
2
DNase-seq
1
pCHi-C
Available data
3
bed bed3+
2
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
58
HeLa-S3
41
H1-hESC
40
stomach
39
heart
37
A549
33
lung
32
brain
32
muscle of arm
32
small intestine
31
adrenal gland
30
K562
29
placenta
28
kidney
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
HFFc6
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
liver
18
renal cortex interstitium
18
renal pelvis
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
adipose tissue
14
spleen
12
adipocyte
12
heart left ventricle
12
mononuclear cell
12
psoas muscle
12
sigmoid colon
12
trophoblast cell
11
MCF-7
11
pericyte cell
10
GM12878
10
ovary
10
pituitary stalk
9
H9
9
body of pancreas
9
gastrocnemius medialis
9
muscle of trunk
9
neural progenitor cell
9
thyroid gland
9
transverse colon
8
T cell
8
chorionic villus
8
endocrine pancreas
8
fibroblast of lung
8
foreskin keratinocyte
8
heart right ventricle
8
keratinocyte
8
lymphocyte
8
natural killer cell
8
smooth muscle cell
7
caudate nucleus
7
endothelial cell
7
endothelial cell of umbilical vein
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
layer of hippocampus
7
left cardiac atrium
7
mammary gland epithelial cell
7
mature neutrophil
7
pancreas
7
regulatory T cell
6
CD4-positive, alpha-beta T cell
6
CD8-positive, alpha-beta T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
aorta
6
chorion membrane
6
dendritic cell
6
endometrium adenocarcinoma
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
retina
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
testis
6
tibial nerve
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
SK-N-SH
5
alternatively activated macrophage
5
astrocyte
5
breast epithelium
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
coronary artery
5
duodenal mucosa
5
epithelial cell of prostate
5
esophagus
5
foreskin fibroblast
5
mucosa of rectum
5
neutrophil
5
skin fibroblast
5
stomach smooth muscle
5
substantia nigra
5
temporal lobe
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
angular gyrus
4
ascending aorta
4
bronchial epithelial cell
4
cerebellum
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
erythroblast
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
iPSC derived cell line
4
inflammatory macrophage
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
macrophage
4
mesendoderm
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
pancreatic delta cell
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
thoracic aorta
4
tibial artery
4
tongue
4
urinary bladder
4
vagina
3
A673
3
Ammon's horn
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
iPS DF 19.11
3
islet of Langerhans
3
monocyte
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
rectum smooth muscle tissue
3
right cardiac atrium
3
skeletal muscle satellite cell
3
type B pancreatic cell
3
uterus
2
8988T
2
A172
Organ
5
embryo
Life stage
4
embryonic
Date released
4
September, 2022
1
March, 2020
Software used
2
chromhmm
2
r
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bigBed bed9
Showing 5 of 5 results
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Download
FileSet
DSR910MPH
released
Annotation file set
: Target gene predictions for BSS01860 trophoblast from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR988IGP
released
Annotation file set
: Target gene predictions for BSS01859 trophoblast from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR504NNS
released
Annotation file set
: Chromatin states for BSS01860 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR950EAR
released
Annotation file set
: Chromatin states for BSS01859 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181ORU
released
Annotation file set
: A target gene prediction annotation in Human Trophoblast of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP