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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
59
stomach
56
heart
49
lung
49
muscle of arm
45
brain
44
small intestine
43
kidney
42
adrenal gland
41
muscle of back
40
common myeloid progenitor, CD34-positive
40
large intestine
40
muscle of leg
40
placenta
39
A549
39
left lung
33
right lung
31
thymus
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
23
CD4-positive, alpha-beta memory T cell
22
B cell
21
liver
21
spinal cord
21
spleen
16
heart left ventricle
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
15
sigmoid colon
14
K562
14
MCF-7
14
trophoblast cell
13
adipose tissue
13
mononuclear cell
12
CD14-positive monocyte
12
body of pancreas
12
chorionic villus
12
gastrocnemius medialis
12
muscle of trunk
12
ovary
12
thyroid gland
12
transverse colon
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
psoas muscle
10
Peyer's patch
10
adipocyte
10
fibroblast of lung
10
layer of hippocampus
10
neurosphere
10
testis
10
upper lobe of left lung
9
T-helper 1 cell
9
caudate nucleus
9
endothelial cell of umbilical vein
9
foreskin fibroblast
9
heart right ventricle
9
natural killer cell
9
neural progenitor cell
9
retina
9
skeletal muscle tissue
9
tibial nerve
8
CD8-positive, alpha-beta T cell
8
H9
8
HeLa-S3
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
left cardiac atrium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
regulatory T cell
8
right renal pelvis
8
substantia nigra
8
temporal lobe
7
breast epithelium
7
cardiac muscle cell
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus muscularis mucosa
7
fibroblast of dermis
7
mature neutrophil
7
mucosa of rectum
7
omental fat pad
7
pancreas
7
parathyroid adenoma
7
right renal cortex interstitium
7
skeletal muscle myoblast
7
stomach smooth muscle
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
angular gyrus
6
aorta
6
ascending aorta
6
bronchial epithelial cell
6
chorion membrane
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
esophagus
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
mammary gland epithelial cell
6
mesenchymal stem cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
prostate gland
6
thoracic aorta
6
tongue
6
trophoblast
6
vagina
5
CD14-positive, CD16-negative classical monocyte
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
coronary artery
5
foreskin melanocyte
5
hepatocyte
5
kidney tubule cell
5
limb
5
mesodermal cell
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
4
Brodmann (1909) area 46
4
GM12878
4
HEK293
4
HepG2
4
NAMALWA cell
4
T-cell
4
alternatively activated macrophage
4
dermis lymphatic vessel endothelial cell
4
frontal cortex
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
muscle cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neural cell
4
peripheral blood mononuclear cell
4
skin fibroblast
4
uterus
3
A172
3
A673
3
ACC112
3
ACHN
3
Ammon's horn
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM23248
3
GM23338
3
H1-hESC
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HUES48
3
HUES6
3
HUES64
3
IMR-90
3
KARPAS-422 cell
Disease term
2
prostate cancer
Organ
3
prostate gland
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
Software used
1
chromhmm
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
files.file_type!
bigBed bed9
Showing 3 of 3 results
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Download
FileSet
DSR228WYR
released
Annotation file set
: Candidate regulatory elements for BSS00157 C4-2B from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR823DZO
released
Annotation file set
: Chromatin states for BSS00157 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718KIU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE C4-2B
Lab:
AMP-T2D consortium
Project:
AMP