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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
histone modifications
3
binding sites
3
target gene predictions
2
accessible chromatin
2
candidate regulatory elements
2
chromatin state
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
1
hg18
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
20
A549
20
heart
19
stomach
17
brain
16
lung
16
muscle of arm
15
kidney
15
placenta
15
small intestine
14
adrenal gland
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
12
thymus
11
hematopoietic multipotent progenitor cell
11
right lung
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
K562
9
breast cancer cell
9
left kidney
9
liver
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
B cell
8
MCF-7
8
mature neutrophil
8
neural progenitor cell
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
adipose tissue
7
keratinocyte
7
melanoma
7
mononuclear cell
7
spleen
6
endothelial cell of hepatic sinusoid
6
fibroblast cell line
6
fibroblast of lung
6
foreskin fibroblast
6
left cardiac atrium
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
endothelial cell of umbilical vein
5
foreskin keratinocyte
5
heart left ventricle
5
layer of hippocampus
5
mammary epithelial cell
5
mammary gland epithelial cell
5
prostate cancer cell line
5
sigmoid colon
5
skeletal muscle myoblast
5
trophoblast cell
4
CD14-positive monocyte
4
GM12878
4
H1-hESC
4
HeLa-S3
4
T cell
4
alternatively activated macrophage
4
body of pancreas
4
bronchial epithelial cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
erythroblast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
gastrocnemius medialis
4
glioblastoma multiforme cancer stem cell
4
islet of Langerhans
4
muscle of trunk
4
neuroblastoma cell
4
osteoblast
4
ovary
4
prostate gland
4
psoas muscle
4
regulatory T cell
4
retina
4
testis
4
thyroid gland
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD4-positive, alpha-beta T cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM19238
3
GM19239
3
GM19240
3
HEK293
3
HL-60
3
IMR-90
3
KARPAS-422 cell
3
NAMALWA cell
3
NT2-D1 cell
3
Peyer's patch
3
SK-N-MC
3
SK-N-SH
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
Tumor-derived cell line
3
WERI-Rb-1
3
acute myeloid leukemia
3
chorion membrane
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
duodenal mucosa
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
heart right ventricle
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
liposarcoma
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neuronal stem cell
3
neurosphere
3
pancreas
3
retinal pigment epithelial cell
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
substantia nigra
3
synovial sarcoma cell
3
temporal lobe
3
tibial nerve
3
triple-negative breast cancer
3
trophoblast
2
BL-2 cell
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
ESC derived cell line
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM23248
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293-T-REx cell
2
HK-2 cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
HuH-7
2
Jurkat
2
KBM-7
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
Disease term
1
hepatocellular carcinoma
Organ
5
liver
Life stage
1
child
Date released
1
August, 2017
1
August, 2021
1
February, 2021
1
October, 2022
1
September, 2022
Software used
3
chromhmm
1
cisgenome
1
e-range
1
macs
Lab
4
AMP-T2D consortium
1
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP
files.file_type!
bigBed bed9
Showing 5 of 5 results
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Download
FileSet
DSR637TIL
released
Annotation file set
: Binding sites annotation for HepG2 (HepG2) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR533TVB
released
Annotation file set
: Chromatin states for BSS00558 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR366OIY
released
Annotation file set
: Binding sites of ChREBP, TF for liver lipogenesis, in HepG2 cells(PMID:21811631)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR877STJ
released
Annotation file set
: Binding sites annotation for Liver Hep_G2 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR035696
released
Annotation file set
: ChromHMM 13-state model for Hepatocellular Carcinoma Cell Line
Lab:
Stephen Parker, UMich
Project:
AMP