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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
23
kidney
22
K562
22
fibroblast
22
heart
20
stomach
19
HFFc6
19
brain
19
endothelial cell
19
macrophage
19
pericyte cell
18
A549
18
hepatocyte
17
lung
17
muscle of arm
16
endothelial cell of hepatic sinusoid
16
small intestine
15
adrenal gland
15
placenta
14
muscle of leg
14
smooth muscle cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
11
B cell
11
T cell
11
astrocyte
11
coronary artery
11
right kidney
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
liver
10
renal cortex interstitium
10
renal pelvis
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
caudate nucleus
9
heart left ventricle
9
left kidney
9
right atrium auricular region
9
tibial artery
8
body of pancreas
8
cerebellum
8
frontal cortex
8
islet of Langerhans
8
omental fat pad
8
putamen
8
spinal cord
8
spleen
8
substantia nigra
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
ascending aorta
7
colon epithelial cell
7
left cardiac atrium
7
lymphocyte
7
subcutaneous adipose tissue
6
Ammon's horn
6
HepG2
6
fibroblast of cardiac tissue
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
6
pancreatic acinar cell
6
pancreatic ductal cell
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
cortical cell of adrenal gland
erythroblast
5
hypothalamus
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
nucleus accumbens
5
ovary
5
regulatory T cell
5
retina
5
right lobe of liver
5
sigmoid colon
5
skeletal muscle satellite cell
5
thyroid gland
5
transverse colon
5
trophoblast cell
5
type II pneumocyte
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
blood vessel smooth muscle cell
4
cerebellum (Hemisphere)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
heart right ventricle
4
layer of hippocampus
4
left ventricle myocardium
4
muscle of trunk
4
natural killer cell
4
osteoblast
4
pancreatic beta cell
4
psoas muscle
4
skin fibroblast
4
skin of body
4
smooth muscle cell of the esophagus
4
testis
3
cardiac fibroblast
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
adipocyte
3
blood cell
3
cardiac muscle cell
3
chorion membrane
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
left renal cortex interstitium
3
left renal pelvis
3
mesothelial cell
3
microglial cell
3
naive T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
prostate gland
3
retinal pigment epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
thoracic aorta
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
angular gyrus
2
aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
Date released
2
November, 2019
Software used
2
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
files.file_type!
bigBed bed9
biosample_term_name!
erythroblast
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR163OWK
released
Annotation file set
: Induced Pluripotent Stem Cell derived from fibroblasts accessible chromatin annotation of overlapping ATAC-seq sites from 2 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR003GNM
released
Annotation file set
: Induced Pluripotent Stem Cell derived from beta-cells accessible chromatin annotation of overlapping ATAC-seq sites from 3 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP