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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
binding sites
2
histone modifications
Annotation Category
7
cis-regulatory elements
Annotation type Category
4
ChIP-seq
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
7
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
cell line
2
primary cell
Biosample term
92
monocyte
33
CD8-positive, alpha-beta T cell
20
breast cancer cell
20
neural progenitor cell
19
fibroblast
18
endothelial cell
14
macrophage
12
excitatory neuron
12
neuroblastoma cell
11
gastric cancer cell
10
Rhabdomyosarcoma
10
diffuse intrinsic pontine glioma
10
pancreatic ductal cell
9
keratinocyte
9
liposarcoma
9
pericyte cell
8
T-cell acute lymphoblastic leukemia
8
astrocyte
8
endothelial cell of hepatic sinusoid
8
esophageal adenocarcinoma
8
fibroblast cell line
8
hepatocyte
8
neuroblastoma cell line
8
smooth muscle cell
7
B cell
7
B-lymphoblastoid cell line
7
HepG2
7
T cell
7
acute myeloid leukemia
7
fibroblast of cardiac tissue
7
hESC cell
7
mammary epithelial cell
7
neuronal stem cell
6
Chondroid Chordoma
6
Rh-4 cell
6
brain
6
glioblastoma multiforme cancer stem cell
6
heart
6
hepatic stellate cell
6
kidney
6
lymphoblastoid cell line
6
melanoma
6
osteoblast
6
pancreas
5
Ewing sarcoma
5
Jurkat
5
MCF-7
5
RS4-11 cell
5
Th1 cell
5
adipocyte
5
bronchial epithelial cell
5
cardiac muscle cell
5
dermal fibroblast
5
diffuse large B-cell lymphoma
5
embryonic stem cell
5
erythroblast
5
esophageal squamous cell carcinoma
5
foreskin fibroblast
5
inhibitory neuron
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
osteosarcoma
5
pancreatic acinar cell
5
pancreatic alpha cell
5
pancreatic beta cell
5
prostate cancer cell line
4
B-lymphocyte
4
COLO205
4
HS-SY-2 cell
4
Mantle cell lymphoma
4
Tumor-derived cell line
4
acute myeloid leukemia cell
4
choroid plexus epithelial cell
4
colon adenocarcinoma
4
erythroid cell
4
erythroid progenitor cell
4
glial cell
4
glioblastoma cell
4
glioma cell
4
immortal neural cell line cell
4
islet of Langerhans
4
leukemic stem cell
4
liver
4
lung fibroblast cell line
4
melanoma cell
4
natural killer cell
4
pancreatic delta cell
4
regulatory T cell
4
skeletal muscle satellite cell
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
3
cardiac fibroblast
3
786-O cell
3
A-673 cell
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
Caco-2 cell
3
D341 Med cell
3
G-401 cell
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
GM23248
3
H1-hESC
3
HAC cell
3
HAP-1
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
HT-29
3
HeLa cell
3
HuH-7
3
IMR-90
3
Ishikawa
3
K562
3
KARPAS-422 cell
3
Kasumi-1
3
LHCN-M2
3
LNCAP
3
LoVo cell
3
MDA-MB-231 cell
3
MG63
3
MM.1S
3
MOLM-13 cell
3
Myoblasts
3
NAMALWA cell
3
NB-4 cell
3
NCCIT cell
3
NHBE cell
3
NHDF cell
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
OCI-AML3
3
OCI-LY7
3
PA-TU-8988T cell
3
PANC-1 cell
3
PC-3
3
PC-9
3
REH cell
3
RKO
3
RPMI8226
3
RWPE1
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
SW480
3
Saos-2 cell
3
T-47D cell
3
Th17 cell
3
U-266 cell
3
U-87 MG
3
U2OS
3
U937
3
WERI-Rb-1
3
WI-38 cell
3
ZR-75-1 cell
3
aortic adventitial fibroblast
3
bone marrow cell
3
cardiac myocyte cell derived cell line
3
caudate nucleus
3
chronic lymphocytic leukemia cell
3
colon cancer cell line
3
colon epithelial cell
3
cortex of kidney
3
cortical cell of adrenal gland
3
enterocyte
3
epithelial cell of prostate
3
epithelial ovarian cancer cell
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
foreskin keratinocyte
3
foreskin melanocyte
3
globus pallidus
3
hESC H9
3
heart left ventricle
3
hematopoietic cell
3
hematopoietic multipotent progenitor cell
3
iPS DF 4.7 Cell Line
3
lymphoblast
3
mast cell
3
metastatic melanoma
3
midbrain
3
mononuclear cell of bone marrow
Organ
5
connective tissue
2
prostate gland
Date released
4
February, 2021
1
February, 2024
1
June, 2020
1
November, 2021
Software used
10
r
8
chromhmm
7
macs
4
encode-ccres
1
deeptools
1
deltasvm
1
samtools
1
umitools
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
1
ENCODE
RFA
5
AMP
1
AMP2
1
ENCODE3
files.file_type!
bigBed bed9
annotation_type_category!
ATAC-seq
Showing 7 of 7 results
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Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR228CGU
released
Annotation file set
: Histone modifications annotation for Prostate 22Rv1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR086JJG
released
Annotation file set
: Binding sites annotation for Prostate 22Rv1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR389QIM
released
Annotation file set
: Binding sites annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP