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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
variant allelic effects
Annotation Category
5
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
7
snATAC-seq
Available data
7
bed bed3+
3
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
67
muscle of arm
56
muscle of leg
54
muscle of back
20
psoas muscle
18
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
11
esophagus muscularis mucosa
11
skeletal muscle satellite cell
9
stomach smooth muscle
7
LHCN-M2
7
gastroesophageal sphincter
7
skeletal muscle fiber
6
skeletal muscle cell
6
type I muscle cell
6
type II muscle cell
5
A673
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
4
rectum smooth muscle tissue
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
forelimb muscle
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
7
musculature of body
Date released
4
February, 2024
3
November, 2021
Software used
5
macs
deeptools
2
deltasvm
2
r
2
samtools
2
umitools
Lab
5
Bing Ren, UCSD
2
Stephen Parker, UMich
Project
4
AMP
3
ENCODE
RFA
3
ENCODE3
2
AMP
2
AMP2
files.file_type!
bigBed bed9
software_used.software.name!
deeptools
Showing 7 of 7 results
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Download
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR776HHT
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR640ZDY
released
Annotation file set
: Variant allelic effects annotation of Skeletal muscle fiber type 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP