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Citing CMDGA
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Annotation type
2
gene expression
1
binding sites
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
2
Gene expression levels
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
2
RNA-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
bigWig
1
tsv
File set status
5
released
Genome assembly (visualization)
3
hg19
Organism
5
Homo sapiens
Biosample type
3
cell line
2
primary cell
Biosample term
17
tibial artery
16
coronary artery
8
fibroblast of pulmonary artery
7
pulmonary artery endothelial cell
5
Afferent / Efferent Arteriole Endothelial Cell
5
smooth muscle cell of the coronary artery
2
aortic endothelial cell
2
endothelial cell of coronary artery
1
abdominal aorta artery
1
circle of Willis
Organ
5
artery
5
blood vessel
5
heart
5
vasculature
Life stage
2
adult
Date released
3
February, 2021
1
February, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
files.file_type!
bigWig
annotation_type!
caQTL
Showing 5 of 5 results
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FileSet
DSR938TKW
released
Annotation file set
: Gene expression annotation of smooth muscle cell of the coronary artery for GSE113348
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR951OND
released
Annotation file set
: Histone modifications annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898IID
released
Annotation file set
: Binding sites annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR277QFW
released
Annotation file set
: Gene expression levels of Coronary artery smooth muscle cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP