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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
111
monocyte
87
heart
85
stomach
70
brain
70
kidney
67
lung
66
muscle of arm
64
HeLa-S3
62
A549
62
small intestine
61
adrenal gland
59
placenta
57
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
48
thymus
47
CD8-positive, alpha-beta T cell
45
right lung
43
hematopoietic multipotent progenitor cell
41
K562
41
right kidney
40
liver
39
renal cortex interstitium
39
renal pelvis
38
B cell
36
left kidney
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spleen
30
heart left ventricle
27
islet of Langerhans
26
MCF-7
26
adipose tissue
26
endothelial cell
25
hepatocyte
24
adipocyte
23
body of pancreas
23
regulatory T cell
23
retina
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
21
EndoC_BH1
21
tibial nerve
20
T-helper 1 cell
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
psoas muscle
19
caudate nucleus
19
foreskin fibroblast
19
keratinocyte
19
natural killer cell
19
ovary
18
HFFc6
18
T-helper 17 cell
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
pancreatic ductal cell
17
heart right ventricle
17
mesenchymal stem cell
17
muscle of trunk
17
pancreas
17
thyroid gland
17
transverse colon
16
HepG2
16
T cell
16
chorionic villus
16
fibroblast
16
fibroblast of lung
16
induced pluripotent stem cell
16
smooth muscle cell
16
testis
16
upper lobe of left lung
15
GM12878
15
coronary artery
15
layer of hippocampus
15
mammary gland epithelial cell
15
skeletal muscle myoblast
15
tibial artery
14
CD4-positive, alpha-beta T cell
14
H9
14
cardiac muscle cell
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
omental fat pad
14
right atrium auricular region
14
skeletal muscle tissue
14
substantia nigra
13
Peyer's patch
13
T-helper 2 cell
13
aorta
13
ascending aorta
13
bronchial epithelial cell
13
cerebellum
13
macrophage
13
neurosphere
13
osteoblast
13
temporal lobe
12
fibroblast of dermis
12
mammary epithelial cell
12
neuroblastoma cell
12
neutrophil
12
prostate gland
12
subcutaneous adipose tissue
11
breast epithelium
11
epithelial cell of prostate
11
frontal cortex
11
retinal pigment epithelial cell
10
22Rv1
10
Ammon's horn
10
Rhabdomyosarcoma
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
neuronal stem cell
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
glomerular visceral epithelial cell
9
left renal pelvis
9
liposarcoma
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
pancreatic delta cell
9
parathyroid adenoma
9
pericyte cell
9
putamen
9
right renal pelvis
9
skeletal muscle satellite cell
9
skin fibroblast
9
thoracic aorta
9
tongue
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
astrocyte
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
mature neutrophil
7
pancreatic beta cell
7
stomach smooth muscle
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
files.file_type!
bigWig
annotation_type!
eQTL
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP