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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
39
Target gene links
8
Gene expression levels
7
cis-regulatory elements
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
cell line
1
stem cell
Biosample term
89
monocyte
63
stomach
62
heart
52
brain
49
lung
49
muscle of arm
48
kidney
45
small intestine
44
placenta
43
A549
43
adrenal gland
43
muscle of leg
42
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
CD8-positive, alpha-beta T cell
39
left lung
39
neural progenitor cell
34
right lung
34
thymus
32
hematopoietic multipotent progenitor cell
30
right kidney
29
renal cortex interstitium
29
renal pelvis
27
left kidney
27
liver
26
B cell
26
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
spleen
20
MCF-7
20
breast cancer cell
20
heart left ventricle
18
K562
18
foreskin keratinocyte
18
retina
16
embryonic stem cell
16
foreskin fibroblast
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
adipose tissue
15
trophoblast cell
14
adipocyte
13
HepG2
13
endothelial cell of umbilical vein
13
gastrocnemius medialis
13
mononuclear cell
13
upper lobe of left lung
12
CD14-positive monocyte
12
keratinocyte
12
neuroblastoma cell
12
psoas muscle
12
regulatory T cell
12
testis
12
thyroid gland
11
CD4-positive, alpha-beta T cell
11
bronchial epithelial cell
11
fibroblast of lung
11
hepatocyte
11
mammary epithelial cell
11
ovary
11
skeletal muscle myoblast
11
transverse colon
10
Rhabdomyosarcoma
10
T cell
10
cardiac muscle cell
10
caudate nucleus
10
chorionic villus
10
gastric cancer cell
10
layer of hippocampus
10
mammary gland epithelial cell
10
mesenchymal stem cell
10
muscle of trunk
10
natural killer cell
10
osteoblast
10
retinal pigment epithelial cell
10
skeletal muscle tissue
10
temporal lobe
9
EndoC_BH1
9
HeLa-S3
9
Peyer's patch
9
body of pancreas
9
diffuse intrinsic pontine glioma
9
endocrine pancreas
9
endothelial cell of hepatic sinusoid
9
heart right ventricle
9
liposarcoma
9
neuronal stem cell
9
neurosphere
9
pancreas
9
prostate gland
9
substantia nigra
9
tibial nerve
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
esophagus squamous epithelium
8
fibroblast of cardiac tissue
8
fibroblast of dermis
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
H1-hESC
7
HL-60
7
IMR-90
7
T-helper 2 cell
7
aorta
7
breast epithelium
7
colonic mucosa
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
fibroblast cell line
7
mature neutrophil
7
right renal pelvis
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
NAMALWA cell
6
SW480
6
T-helper 1 cell
6
T-helper 17 cell
6
angular gyrus
6
cerebellum
6
chondrocyte
6
choroid plexus epithelial cell
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
fibroblast of villous mesenchyme
6
foreskin melanocyte
6
hESC cell
6
islet of Langerhans
6
left cardiac atrium
6
left renal cortex interstitium
6
lower leg skin
6
mesodermal cell
6
neuroblastoma cell line
6
neutrophil
6
omental fat pad
6
pigmented layer of retina
6
right renal cortex interstitium
6
trophoblast
5
CD14-positive, CD16-negative classical monocyte
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
HUES6
5
HuH-7
5
Jurkat
5
KBM-7
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
NT2-D1 cell
5
OCI-LY1
5
OCI-LY7
5
PC-3
5
PC-9
5
SJSA1
5
SK-N-MC
5
T47D
5
WERI-Rb-1
5
acute myeloid leukemia
5
ascending aorta
5
dermis lymphatic vessel endothelial cell
5
endothelial cell
5
esophagus
5
fibroblast
5
fibroblast of breast
5
fibroblast of pulmonary artery
5
immortal human breast epithelial cell line cell
Organ
7
embryo
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
June, 2020
1
October, 2022
Software used
3
chromhmm
3
macs
1
r
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
files.file_type!
bigWig
Showing 7 of 7 results
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP