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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
2
ChIP-seq
2
snATAC-seq
1
DNase-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
6
bed bed3+
1
bed bed9
1
bigBed bed9
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
in vitro differentiated cells
6
primary cell
1
stem cell
Biosample term
115
monocyte
87
heart
86
stomach
72
brain
71
kidney
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
57
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
thymus
47
liver
46
CD8-positive, alpha-beta T cell
45
right lung
41
K562
41
right kidney
40
islet of Langerhans
39
renal cortex interstitium
39
renal pelvis
36
left kidney
35
spinal cord
34
B cell
32
CD4-positive, alpha-beta memory T cell
32
spleen
31
CD14-positive monocyte
31
heart left ventricle
30
adipose tissue
26
MCF-7
26
endothelial cell
25
regulatory T cell
24
body of pancreas
24
retina
23
sigmoid colon
23
tibial nerve
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
21
EndoC_BH1
21
T-helper 1 cell
21
caudate nucleus
21
hepatocyte
21
macrophage
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
psoas muscle
19
T-helper 17 cell
19
foreskin fibroblast
19
foreskin keratinocyte
19
keratinocyte
18
HFFc6
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
natural killer cell
18
pancreas
18
subcutaneous adipose tissue
18
substantia nigra
18
thyroid gland
18
transverse colon
18
trophoblast cell
17
heart right ventricle
17
muscle of trunk
17
right atrium auricular region
17
testis
16
GM12878
16
HepG2
16
T cell
16
chorionic villus
16
coronary artery
16
fibroblast of lung
16
layer of hippocampus
16
omental fat pad
16
skeletal muscle tissue
16
tibial artery
16
upper lobe of left lung
15
cerebellum
15
fibroblast
15
neutrophil
15
pancreatic ductal cell
14
CD4-positive, alpha-beta T cell
14
H9
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
frontal cortex
14
prostate gland
14
skeletal muscle myoblast
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
13
osteoblast
13
putamen
13
temporal lobe
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
mammary gland epithelial cell
12
neuroblastoma cell
12
smooth muscle cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
pancreatic acinar cell
10
right renal cortex interstitium
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
endothelial cell of hepatic sinusoid
9
esophagus
9
glomerular visceral epithelial cell
9
left renal pelvis
9
liposarcoma
9
pancreatic delta cell
9
parathyroid adenoma
9
pericyte cell
9
right renal pelvis
9
skeletal muscle satellite cell
9
thoracic aorta
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cardiac muscle cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
astrocyte
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
mature neutrophil
7
pancreatic beta cell
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
HAP-1
6
HUES8
6
Jurkat
6
KARPAS-422 cell
6
LNCAP
6
LoVo cell
6
MM.1S
6
OCI-LY7
6
PC-9
Organ
7
connective tissue
Life stage
2
adult
Date released
3
February, 2024
1
February, 2021
1
March, 2020
1
October, 2019
1
October, 2022
Software used
1
chromhmm
1
deeptools
1
eigenmt
1
encode-ccres
1
macs
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
files.file_type!
bigWig
biosample_type!
in vitro differentiated cells
Showing 7 of 7 results
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Download
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP