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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
15
CD14-positive monocyte
14
endothelial cell
13
smooth muscle cell
12
fibroblast
11
adipocyte
10
endothelial cell of hepatic sinusoid
10
pituitary stalk
9
pericyte cell
7
macrophage
6
dendritic cell
6
skeletal muscle fiber
5
keratinocyte
5
left cardiac atrium
5
mesenchymal stem cell
5
type I muscle cell
5
type II muscle cell
4
CD8-positive, alpha-beta T cell
4
cartilage tissue
4
liver
4
pancreatic acinar cell
4
pancreatic ductal cell
3
CD4-positive helper T cell
3
T cell
3
astrocyte
3
basal cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
enterocyte
3
hepatocyte
3
islet of Langerhans
3
myofibroblast cell
3
pancreatic A cell
3
pancreatic delta cell
3
skeletal muscle satellite cell
3
type B pancreatic cell
3
type II pneumocyte
2
BJAB cell
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
Schwann cell
2
T-cell
2
THP-1
2
U937
2
adrenal gland
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
endothelial cell of umbilical vein
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
fibroblast of lung
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
goblet cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary epithelial cell
2
mammary gland epithelial cell
2
mast cell
2
memory B cell
2
mesothelial cell
2
monocyte
2
natural killer cell
2
neural cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
parietal cell
2
peptic cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
stomach
2
subcutaneous adipose tissue
2
thyroid follicular cell
2
trophoblast cell
2
vascular associated smooth muscle cell
1
A549
1
A673
1
B cell
1
B cell, CD19-positive
1
CD34-PB
1
CD4-positive, alpha-beta T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipose tissue
1
alveolar macrophage
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac ventricle
1
caudate nucleus
1
cell
1
ciliated cell
1
cingulate gyrus
1
club cell
1
colon goblet cell
1
colonic mucosa
1
common myeloid progenitor, CD34-positive
1
conventional dendritic cell
1
coronary artery
1
duodenal mucosa
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of prostate
1
erythroblast
1
fat cell
1
fibroblast of arm
1
fibroblast of cardiac tissue
1
fibroblast of dermis
1
foreskin fibroblast
1
foveolar cell of stomach
1
gastrocnemius medialis
1
granular cell of epidermis
1
granulosa cell
1
iPS DF 19.11
1
induced pluripotent stem cell
1
intestinal tuft cell
1
kidney
1
large intestine
1
layer of hippocampus
1
luminal epithelial cell of prostatic duct
1
luteal cell
1
lymphocyte of B lineage
1
mature NK T cell
1
megakaryocyte
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
mesendoderm
1
microglial cell
1
mid-frontal lobe
1
mucosa of rectum
1
muscle of leg
1
muscle of trunk
1
myoepithelial cell
1
myotube
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuronal stem cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
osteoblast
1
ovary
1
pancreas
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
placenta
1
plasma cell
1
plasmacytoid dendritic cell
1
psoas muscle
1
purified protein and synthetic DNA oligo binding assay
1
rectum smooth muscle tissue
1
regular atrial cardiac myocyte
1
regulatory T cell
1
respiratory goblet cell
1
schwann cell
1
sigmoid colon
1
skeletal muscle
Organ
5
connective tissue
Date released
3
February, 2024
1
May, 2021
1
October, 2022
Software used
1
abc
1
deeptools
1
eigenmt
1
macs
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
AMP-T2D consortium
4
Stephen Parker, UMich
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
4
AMP2
1
AMP
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
Showing 5 of 5 results
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Download
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP