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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
115
monocyte
59
HeLa-S3
53
H1-hESC
50
heart
46
neural progenitor cell
46
stomach
43
brain
42
kidney
41
A549
40
CD8-positive, alpha-beta T cell
40
islet of Langerhans
35
lung
34
K562
34
adrenal gland
34
liver
34
placenta
34
small intestine
33
muscle of arm
30
muscle of leg
29
large intestine
28
thymus
27
endothelial cell
common myeloid progenitor, CD34-positive
26
left lung
25
muscle of back
24
B cell
24
hematopoietic multipotent progenitor cell
23
CD14-positive monocyte
23
adipose tissue
23
right lung
22
EndoC_BH1
22
hepatocyte
21
adipocyte
21
macrophage
21
right kidney
21
spinal cord
20
breast cancer cell
20
epithelial cell of proximal tubule
20
regulatory T cell
20
renal pelvis
19
HFFc6
19
heart left ventricle
19
renal cortex interstitium
18
CD4-positive, alpha-beta memory T cell
18
embryonic stem cell
18
glomerular endothelial cell
18
left kidney
18
pancreatic ductal cell
17
MCF-7
17
fibroblast
17
retina
17
spleen
17
tibial nerve
16
caudate nucleus
16
induced pluripotent stem cell
16
keratinocyte
16
subcutaneous adipose tissue
15
T-helper 1 cell
15
body of pancreas
15
smooth muscle cell
14
CD8-positive, alpha-beta memory T cell
14
GM12878
14
T cell
14
T-helper 17 cell
14
mesenchymal stem cell
14
natural killer cell
14
trophoblast cell
13
HepG2
13
coronary artery
13
pancreas
13
right atrium auricular region
13
substantia nigra
13
tibial artery
12
endothelial cell of umbilical vein
12
frontal cortex
12
lymphoblastoid cell line
12
mononuclear cell
12
neuroblastoma cell
12
sigmoid colon
11
ascending aorta
11
foreskin fibroblast
11
foreskin keratinocyte
11
mammary gland epithelial cell
11
neutrophil
11
osteoblast
11
ovary
11
psoas muscle
11
skeletal muscle myoblast
11
thyroid gland
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
cerebellum
10
fibroblast of cardiac tissue
10
fibroblast of lung
10
gastric cancer cell
10
heart right ventricle
10
omental fat pad
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
putamen
10
skeletal muscle tissue
10
testis
9
Ammon's horn
9
H9
9
aorta
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
left cardiac atrium
9
liposarcoma
9
pancreatic delta cell
9
transverse colon
8
B-lymphoblastoid cell line
8
T-helper 2 cell
8
fibroblast cell line
8
fibroblast of dermis
8
gastrocnemius medialis
8
glomerular visceral epithelial cell
8
layer of hippocampus
8
lymphocyte
8
mammary epithelial cell
8
pericyte cell
8
pituitary stalk
8
prostate gland
8
retinal pigment epithelial cell
8
temporal lobe
7
CD4-positive helper T cell
7
Jurkat
7
amygdala
7
bronchial epithelial cell
7
cardiomyocytes (cardiac muscle cell)
7
endocrine pancreas
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
mesendoderm
7
muscle of trunk
7
neuronal stem cell
7
pancreatic beta cell
7
skin fibroblast
7
upper lobe of left lung
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD4-positive, alpha-beta T cell
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19238
6
GM19239
6
GM19240
6
HUES8
6
IMR-90
6
KARPAS-422 cell
6
Peyer's patch
6
WERI-Rb-1
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
choroid plexus epithelial cell
6
endodermal cell
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
pancreatic alpha cell
6
pigmented layer of retina
6
skeletal muscle satellite cell
6
trophoblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
Life stage
2
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
chromhmm
1
nospecificsoft_customcode
1
r
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
files.file_type!
bigWig
biosample_term_name!
common myeloid progenitor, CD34-positive
annotation_type!
candidate regulatory elements
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP