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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
115
monocyte
64
HeLa-S3
62
A549
54
common myeloid progenitor, CD34-positive
50
H1-hESC
47
CD8-positive, alpha-beta T cell
43
hematopoietic multipotent progenitor cell
41
K562
40
islet of Langerhans
40
liver
38
B cell
38
neural progenitor cell
33
stomach
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
adipose tissue
30
adrenal gland
28
spleen
27
endothelial cell
26
MCF-7
25
regulatory T cell
24
adipocyte
24
body of pancreas
23
heart left ventricle
23
sigmoid colon
23
tibial nerve
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
21
T-helper 1 cell
21
caudate nucleus
21
hepatocyte
21
kidney
21
macrophage
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
natural killer cell
20
psoas muscle
19
T-helper 17 cell
19
foreskin fibroblast
19
keratinocyte
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
pancreas
18
pancreatic ductal cell
18
subcutaneous adipose tissue
18
substantia nigra
18
thyroid gland
18
transverse colon
17
T cell
17
fibroblast
17
heart
17
right atrium auricular region
16
GM12878
16
HepG2
16
coronary artery
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
omental fat pad
16
ovary
16
skeletal muscle tissue
16
tibial artery
16
upper lobe of left lung
15
cerebellum
15
mammary gland epithelial cell
15
neutrophil
15
skeletal muscle myoblast
15
small intestine
14
CD4-positive, alpha-beta T cell
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
frontal cortex
14
prostate gland
13
Peyer's patch
13
bronchial epithelial cell
13
heart right ventricle
13
mesenchymal stem cell
13
osteoblast
13
putamen
13
smooth muscle cell
13
temporal lobe
12
aorta
12
fibroblast of dermis
12
lung
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
retina
11
retinal pigment epithelial cell
11
testis
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
lymphocyte
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
9
SK-N-DZ
9
SK-N-SH
9
brain
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
esophagus
9
glomerular visceral epithelial cell
9
liposarcoma
9
pancreatic delta cell
9
parathyroid adenoma
9
pericyte cell
9
skeletal muscle satellite cell
9
thoracic aorta
9
thymus
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
NAMALWA cell
8
cardiac muscle cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
astrocyte
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
mature neutrophil
7
neuronal stem cell
7
pancreatic beta cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM23248
6
H9
6
HAP-1
6
HUES8
6
Jurkat
6
KARPAS-422 cell
6
LNCAP
6
LoVo cell
6
MM.1S
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
anterior cingulate cortex
6
chondrocyte
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
Life stage
embryonic
Date released
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
files.file_type!
bigWig
biosample_term_name!
muscle of leg
relevant_life_stage!
embryonic
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP