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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
86
heart
85
stomach
69
brain
69
kidney
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
adrenal gland
61
A549
58
placenta
57
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
47
thymus
45
liver
45
right lung
42
hematopoietic multipotent progenitor cell
41
right kidney
40
K562
39
islet of Langerhans
renal cortex interstitium
39
renal pelvis
36
B cell
36
left kidney
35
neural progenitor cell
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
spleen
31
CD14-positive monocyte
30
adipose tissue
30
heart left ventricle
29
monocyte
26
endothelial cell
24
MCF-7
24
body of pancreas
24
regulatory T cell
23
adipocyte
23
retina
23
sigmoid colon
23
tibial nerve
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
trophoblast cell
21
EndoC_BH1
21
T-helper 1 cell
21
foreskin keratinocyte
21
hepatocyte
20
caudate nucleus
20
glomerular endothelial cell
20
macrophage
20
mononuclear cell
20
ovary
20
psoas muscle
19
T-helper 17 cell
18
HFFc6
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
natural killer cell
18
subcutaneous adipose tissue
18
thyroid gland
18
transverse colon
17
CD8-positive, alpha-beta T cell
17
foreskin fibroblast
17
heart right ventricle
17
mesenchymal stem cell
17
muscle of trunk
17
pancreas
17
right atrium auricular region
17
smooth muscle cell
17
substantia nigra
16
T cell
16
chorionic villus
16
coronary artery
16
embryonic stem cell
16
fibroblast of lung
16
induced pluripotent stem cell
16
keratinocyte
16
omental fat pad
16
pancreatic ductal cell
16
testis
16
tibial artery
15
GM12878
15
fibroblast
15
neutrophil
15
skeletal muscle tissue
15
upper lobe of left lung
14
CD4-positive, alpha-beta T cell
14
H9
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
frontal cortex
14
layer of hippocampus
14
mammary gland epithelial cell
14
skeletal muscle myoblast
13
Peyer's patch
13
aorta
13
cerebellum
13
neurosphere
12
cardiac muscle cell
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
prostate gland
12
putamen
12
temporal lobe
11
Ammon's horn
11
breast epithelium
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
osteoblast
10
HepG2
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
left cardiac atrium
10
left renal cortex interstitium
10
retinal pigment epithelial cell
10
right renal cortex interstitium
10
trophoblast
9
22Rv1
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
endothelial cell of hepatic sinusoid
9
esophagus
9
glomerular visceral epithelial cell
9
left renal pelvis
9
mammary epithelial cell
9
pancreatic delta cell
9
parathyroid adenoma
9
pericyte cell
9
progenitor cell of endocrine pancreas
9
right renal pelvis
9
skeletal muscle satellite cell
9
skin fibroblast
9
thoracic aorta
9
tongue
9
vagina
8
HEK293
8
NAMALWA cell
8
breast cancer cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
lymphoblastoid cell line
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
pancreatic acinar cell
8
pituitary stalk
7
GM06990
7
GM12864
7
GM12865
7
IMR-90
7
SK-N-DZ
7
T47D
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
endometrium adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast cell line
7
kidney glomerular epithelial cell
7
pancreatic beta cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
CMK
6
Caco-2 cell
6
Daoy
6
GM08714
6
GM10266
6
GM19240
6
GM23248
6
HAP-1
6
HT-29
6
HUES8
6
LoVo cell
6
OCI-LY7
6
SJSA1
6
SK-N-MC
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
files.file_type!
bigWig
biosample_term_name!
renal cortex interstitium
annotation_type!
histone modifications
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP