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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
Biosample term
115
monocyte
87
heart
86
stomach
72
brain
71
kidney
67
lung
66
muscle of arm
64
HeLa-S3
62
A549
62
small intestine
61
adrenal gland
60
placenta
57
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
50
neural progenitor cell
47
CD8-positive, alpha-beta T cell
47
thymus
46
liver
45
right lung
43
hematopoietic multipotent progenitor cell
41
K562
41
right kidney
40
islet of Langerhans
39
renal cortex interstitium
39
renal pelvis
38
B cell
36
left kidney
35
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spleen
30
heart left ventricle
29
adipose tissue
27
endothelial cell
26
MCF-7
25
hepatocyte
25
regulatory T cell
24
adipocyte
24
body of pancreas
24
retina
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
sigmoid colon
21
EndoC_BH1
21
T-helper 1 cell
21
caudate nucleus
21
macrophage
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
natural killer cell
19
T-helper 17 cell
19
foreskin fibroblast
19
keratinocyte
19
ovary
19
psoas muscle
18
HFFc6
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
pancreatic ductal cell
18
subcutaneous adipose tissue
18
substantia nigra
18
thyroid gland
18
transverse colon
17
T cell
17
embryonic stem cell
17
fibroblast
17
muscle of trunk
17
right atrium auricular region
17
smooth muscle cell
17
testis
16
HepG2
16
chorionic villus
16
coronary artery
16
fibroblast of lung
16
heart right ventricle
16
induced pluripotent stem cell
16
layer of hippocampus
16
mesenchymal stem cell
16
omental fat pad
16
pancreas
16
skeletal muscle tissue
16
tibial artery
16
upper lobe of left lung
15
GM12878
15
cerebellum
15
mammary gland epithelial cell
15
neutrophil
15
skeletal muscle myoblast
14
CD4-positive, alpha-beta T cell
14
H9
14
T-helper 2 cell
14
ascending aorta
14
cardiac muscle cell
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
frontal cortex
14
prostate gland
13
Peyer's patch
13
bronchial epithelial cell
13
neurosphere
13
osteoblast
13
putamen
13
temporal lobe
12
aorta
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
11
breast epithelium
11
epithelial cell of prostate
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
retinal pigment epithelial cell
10
22Rv1
10
Ammon's horn
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
neuronal stem cell
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
glomerular visceral epithelial cell
9
left renal pelvis
9
liposarcoma
9
pancreatic delta cell
9
parathyroid adenoma
9
pericyte cell
9
right renal pelvis
9
skeletal muscle satellite cell
9
skin fibroblast
9
thoracic aorta
9
tongue
9
trophoblast
9
vagina
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
astrocyte
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
mature neutrophil
7
pancreatic beta cell
7
right lobe of liver
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
files.file_type!
bigWig
software_used.software.name!
nospecificsoft_customcode
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP