Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
100
monocyte
58
HeLa-S3
47
stomach
46
heart
44
CD8-positive, alpha-beta T cell
44
H1-hESC
39
brain
36
kidney
36
neural progenitor cell
35
lung
34
muscle of arm
33
adrenal gland
33
small intestine
32
placenta
31
liver
31
muscle of leg
30
large intestine
29
K562
28
common myeloid progenitor, CD34-positive
28
muscle of back
27
islet of Langerhans
26
A549
26
left lung
26
thymus
23
CD14-positive monocyte
23
right lung
22
hematopoietic multipotent progenitor cell
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
spinal cord
20
B cell
20
breast cancer cell
20
heart left ventricle
19
HFFc6
19
macrophage
19
spleen
18
adipocyte
18
left kidney
17
embryonic stem cell
17
fibroblast
17
retina
16
MCF-7
16
adipose tissue
16
endothelial cell
15
foreskin fibroblast
15
keratinocyte
15
tibial nerve
14
CD4-positive, alpha-beta T cell
14
CD4-positive, alpha-beta memory T cell
14
EndoC_BH1
14
GM12878
14
H9
14
HepG2
14
caudate nucleus
14
endothelial cell of umbilical vein
14
pancreas
14
subcutaneous adipose tissue
13
body of pancreas
13
foreskin keratinocyte
12
cardiac muscle cell
12
lymphoblastoid cell line
12
mammary epithelial cell
12
mesenchymal stem cell
12
neuroblastoma cell
12
regulatory T cell
12
smooth muscle cell
12
substantia nigra
12
trophoblast cell
11
coronary artery
11
hepatocyte
11
neutrophil
11
ovary
11
psoas muscle
11
putamen
11
sigmoid colon
11
skeletal muscle myoblast
11
tibial artery
10
Rhabdomyosarcoma
10
T cell
10
fibroblast of lung
10
gastric cancer cell
10
heart right ventricle
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
natural killer cell
10
neuronal stem cell
10
omental fat pad
10
osteoblast
10
testis
10
thyroid gland
9
bronchial epithelial cell
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
layer of hippocampus
9
liposarcoma
9
muscle of trunk
9
right atrium auricular region
9
transverse colon
9
upper lobe of left lung
8
Ammon's horn
8
B-lymphoblastoid cell line
8
CD8-positive, alpha-beta memory T cell
8
ascending aorta
8
cerebellum
8
fibroblast cell line
8
frontal cortex
8
gastrocnemius medialis
8
left cardiac atrium
8
mammary gland epithelial cell
8
pituitary stalk
8
prostate gland
8
retinal pigment epithelial cell
8
skeletal muscle tissue
7
CD4-positive helper T cell
7
HEK293
7
IMR-90
7
Jurkat
7
Peyer's patch
7
aorta
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
fibroblast of cardiac tissue
7
lymphocyte
7
mature neutrophil
7
mesendoderm
7
pericyte cell
7
temporal lobe
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HL-60
6
HT-29
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
PC-9
6
breast epithelium
6
chondrocyte
6
epithelial cell of prostate
6
foreskin melanocyte
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
mononuclear cell
6
neuroblastoma cell line
6
pancreatic ductal cell
6
pigmented layer of retina
6
right renal cortex interstitium
6
right renal pelvis
6
trophoblast
6
uterus
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM19238
5
GM19239
5
GM23248
5
HCT-116 cell
5
LoVo cell
5
MG63
5
MM.1S
5
SK-N-MC
5
SW480
5
acute myeloid leukemia
5
amygdala
5
chorionic villus
5
dermis blood vessel endothelial cell
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
fibroblast of dermis
5
left renal cortex interstitium
5
left renal pelvis
5
neurosphere
5
osteosarcoma
5
prostate cancer cell line
5
right lobe of liver
4
B-lymphocyte
4
C1 segment of cervical spinal cord
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
Life stage
2
embryonic
Date released
3
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
3
macs
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
files.file_type!
bigWig
software_used.software.name!
r
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP