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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
114
monocyte
86
heart
86
stomach
71
brain
70
kidney
67
lung
66
muscle of arm
63
HeLa-S3
62
small intestine
61
adrenal gland
60
A549
59
placenta
57
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
H1-hESC
52
left lung
47
CD8-positive, alpha-beta T cell
46
neural progenitor cell
46
thymus
45
liver
45
right lung
42
hematopoietic multipotent progenitor cell
41
right kidney
39
K562
39
renal cortex interstitium
39
renal pelvis
38
B cell
38
islet of Langerhans
36
left kidney
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
heart left ventricle
30
spleen
28
adipose tissue
25
endothelial cell
24
body of pancreas
24
hepatocyte
24
regulatory T cell
23
MCF-7
23
adipocyte
23
retina
23
tibial nerve
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
sigmoid colon
21
EndoC_BH1
21
T-helper 1 cell
21
caudate nucleus
21
epithelial cell of proximal tubule
21
foreskin keratinocyte
20
glomerular endothelial cell
20
macrophage
20
natural killer cell
19
T-helper 17 cell
19
mononuclear cell
19
ovary
19
psoas muscle
18
HFFc6
18
gastrocnemius medialis
18
subcutaneous adipose tissue
18
substantia nigra
18
thyroid gland
18
transverse colon
17
T cell
17
endothelial cell of umbilical vein
17
muscle of trunk
17
right atrium auricular region
17
smooth muscle cell
16
chorionic villus
16
coronary artery
16
heart right ventricle
16
induced pluripotent stem cell
16
omental fat pad
16
pancreatic ductal cell
16
skeletal muscle tissue
16
testis
16
tibial artery
15
H9
15
cerebellum
15
fibroblast
15
foreskin fibroblast
15
layer of hippocampus
15
mesenchymal stem cell
15
neutrophil
15
pancreas
14
CD4-positive, alpha-beta T cell
14
GM12878
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
frontal cortex
14
keratinocyte
14
upper lobe of left lung
13
Peyer's patch
13
embryonic stem cell
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
mammary gland epithelial cell
13
neurosphere
13
putamen
13
temporal lobe
12
HepG2
12
aorta
12
skeletal muscle myoblast
11
breast cancer cell
11
breast epithelium
11
cardiac muscle cell
11
fibroblast of dermis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
prostate gland
10
Ammon's horn
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphoblastoid cell line
10
lymphocyte
10
osteoblast
10
pancreatic acinar cell
10
right renal cortex interstitium
9
22Rv1
9
SK-N-DZ
9
cardiomyocytes
9
colonic mucosa
9
glomerular visceral epithelial cell
9
left renal pelvis
9
pancreatic delta cell
9
parathyroid adenoma
9
pericyte cell
9
progenitor cell of endocrine pancreas
9
right renal pelvis
9
skeletal muscle satellite cell
9
thoracic aorta
9
tongue
9
vagina
8
Rhabdomyosarcoma
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
gastric cancer cell
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
retinal pigment epithelial cell
8
skin fibroblast
7
CD4-positive helper T cell
7
NAMALWA cell
7
SK-N-SH
7
T47D
7
amygdala
7
angular gyrus
7
astrocyte
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
endodermal cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
extended pluripotent stem (EPS) cells
7
eye
7
kidney glomerular epithelial cell
7
neuroblastoma cell
7
pancreatic beta cell
7
right lobe of liver
7
stomach smooth muscle
7
trophoblast
7
uterus
6
B-lymphoblastoid cell line
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM18507
6
GM19240
6
GM23248
6
HCT116
6
HEK293
6
HT-29
6
IMR-90
6
MM.1S
6
WI38
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
diffuse intrinsic pontine glioma
6
fibroblast of breast
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
files.file_type!
bigWig
software_used.software.name!
nospecificsoft_customcode
annotation_type!
binding sites
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP