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Annotation type
1
accessible chromatin
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
66
muscle of arm
57
muscle of leg
54
muscle of back
20
psoas muscle
18
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
11
esophagus muscularis mucosa
9
skeletal muscle satellite cell
9
stomach smooth muscle
7
LHCN-M2
7
gastroesophageal sphincter
6
skeletal muscle fiber
5
A673
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
5
skeletal muscle cell
5
type I muscle cell
5
type II muscle cell
4
rectum smooth muscle tissue
2
muscle of leg
2
cardiac muscle myoblast
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
hindlimb muscle
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
forelimb muscle
1
hindlimb muscle
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
5
musculature of body
Date released
3
February, 2024
1
November, 2021
1
October, 2022
Software used
1
abc
1
deeptools
1
eigenmt
1
macs
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP2
1
ENCODE3
files.file_type!
bigWig
Showing 5 of 5 results
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Download
FileSet
DSR018YPM
released
Annotation file set
: Target gene predictions of Type II Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR816KKF
released
Annotation file set
: Cell type chromatin broad peaks and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR522PJU
released
Annotation file set
: Cell type gene expression mean TPM and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP