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Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
1
binding sites
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
snRNA-seq
Available data
1
bed bed3+
tsv
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
primary cell
Biosample term
9
breast cancer cell
7
melanoma
6
endothelial cell of hepatic sinusoid
6
fibroblast cell line
5
hepatocyte
5
prostate cancer cell line
4
foreskin fibroblast
4
glioblastoma multiforme cancer stem cell
4
islet of Langerhans
4
keratinocyte
4
mammary epithelial cell
4
neural progenitor cell
4
neuroblastoma cell
3
HepG2
3
MCF-7
3
T-cell acute lymphoblastic leukemia
3
Tumor-derived cell line
3
acute myeloid leukemia
3
cardiac muscle cell
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
embryonic stem cell
3
endothelial cell
3
liposarcoma
3
neuronal stem cell
3
osteoblast
3
pancreatic ductal cell
3
skeletal muscle myoblast
3
synovial sarcoma cell
3
triple-negative breast cancer
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
ECC-1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10847
2
GM12801
2
GM12864
2
GM12865
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12878
2
GM12891
2
GM12892
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM19240
2
H1-hESC
2
HAC cell
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HEK293-T-REx cell
2
HL-60
2
HS-SY-2 cell
2
IMR-90
2
Jurkat
2
K562
2
Mantle cell lymphoma
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
PANC-1 cell
2
PFSK-1 cell
2
RS4-11 cell
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SK-MEL-5 cell
2
SK-N-MC
2
SK-N-SH_RA
2
SUM-185PE cell
2
T-47D cell
2
T-lymphocyte
2
Th1 cell
2
U-87 MG
2
U2OS
2
WERI-Rb-1
2
WI-38 cell
2
adipocyte
2
adult acute myeloid leukemia
2
aortic adventitial fibroblast
2
bronchial epithelial cell
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia cell
2
chronic myeloid leukemia cell
2
colon adenocarcinoma
2
diffuse large B-cell lymphoma
2
endothelial cell of coronary artery
2
endothelial cell of umbilical vein
2
epithelial cell of proximal tubule
2
erythroblast
2
erythroid progenitor cell
2
esophageal epithelial cell
2
esophageal squamous cell carcinoma
2
fibroblast
2
fibroblast of lung
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
gastric cancer cell
2
glial cell
2
glioblastoma cell
2
immortal neural cell line cell
2
leukemic stem cell
2
lung fibroblast cell line
2
lymphoblastoid cell line
2
mammary gland epithelial cell
2
mesenchymal stem cell
2
metastatic melanoma
2
mononuclear cell of bone marrow
2
myotube
2
neuroblastoma cell line
2
osteosarcoma
2
pancreatic cancer cell
2
pancreatic cell line
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate derived cell line
2
prostate gland
2
renal epithelial cell
2
retinal pigment epithelial cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
smooth muscle cell of the coronary artery
2
spinal cord
2
tracheal epithelial cell
1
143B
1
22Rv1
1
451Lu cell
1
501A
1
697 cell
1
769-P cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A2780 cell
1
AGS cell
1
ALL-SIL cell
1
Adipose stromal cell
1
AsPC-1 cell
1
B-CPAP cell
1
B-cell acute lymphoblastic leukemia
1
B-cell lymphoma cell
1
B-lymphoblast
1
B-lymphoblastoid cell line
1
B-lymphocyte
1
BCBL-1 cell
1
BEAS-2B cell
1
BEL-7402 cell
1
BG03
1
BICR 31
1
BJAB cell
1
BL-2 cell
1
BL-41 cell
1
BPE cell
1
BT-20 cell
1
BT-474 cell
1
BT-549 cell
1
BeWo cell
1
BxPC-3 cell
1
C666-1 cell
1
CA46 cell
1
CAL-51 cell
1
CCLP-1 cell
1
CCRF-CEM cell
1
CD1c-positive myeloid dendritic cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD8-Positive T-Lymphocytes
1
CFPAC-1 cell
1
CHL-1 cell
1
CHLA-90 cell
1
CHP-134 cell
1
CMK
1
COLO 741 cell
1
COLO-800 cell
1
COLO-829 cell
Organ
2
connective tissue
Date released
1
February, 2021
1
February, 2024
Software used
1
deeptools
1
macs
1
r
1
samtools
1
umitools
Lab
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
2
AMP
RFA
1
AMP
1
AMP2
files.file_type!
tsv
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Download
FileSet
DSR389QIM
released
Annotation file set
: Binding sites annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP