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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
snATAC-seq
Available data
2
bed bed9
1
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
26
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
25
kidney
24
heart
22
K562
22
fibroblast
21
brain
20
stomach
19
HFFc6
19
endothelial cell
19
macrophage
19
pericyte cell
18
A549
17
lung
17
muscle of arm
16
muscle of leg
16
small intestine
15
adrenal gland
15
placenta
14
smooth muscle cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
hepatocyte
13
large intestine
13
left lung
13
muscle of back
12
endothelial cell of hepatic sinusoid
12
heart left ventricle
11
B cell
11
T cell
11
astrocyte
11
right kidney
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
liver
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
left kidney
8
coronary artery
8
islet of Langerhans
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
colon epithelial cell
7
left cardiac atrium
7
lymphocyte
7
tibial nerve
6
HepG2
6
fibroblast of cardiac tissue
6
heart right ventricle
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
6
pancreatic acinar cell
6
pancreatic ductal cell
6
skeletal muscle satellite cell
6
tibial artery
5
MCF-7
5
caudate nucleus
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
erythroblast
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
ovary
5
regulatory T cell
5
right atrium auricular region
5
sigmoid colon
5
thyroid gland
5
transverse colon
5
trophoblast cell
5
type II pneumocyte
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
ascending aorta
4
blood vessel smooth muscle cell
4
body of pancreas
4
cerebellum
4
chorionic villus
4
endocrine pancreas
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
frontal cortex
4
gabaergic neuron
4
gastrocnemius medialis
4
glutamatergic neuron
4
layer of hippocampus
4
muscle of trunk
4
natural killer cell
4
omental fat pad
4
osteoblast
4
pancreatic beta cell
4
psoas muscle
4
putamen
4
retina
4
skin fibroblast
4
skin of body
4
smooth muscle cell of the esophagus
4
substantia nigra
4
temporal lobe
4
testis
4
thoracic aorta
3
cardiac fibroblast
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
adipocyte
3
blood cell
3
cardiac muscle cell
3
chorion membrane
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
left renal cortex interstitium
3
left renal pelvis
3
mesenchymal stem cell
3
mesothelial cell
3
microglial cell
3
naive T cell
3
neurosphere
3
neutrophil
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
prostate gland
3
retinal pigment epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
subcutaneous adipose tissue
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
eccrine cell
2
endodermal cell
Organ
3
connective tissue
Life stage
1
adult
1
unknown
Date released
2
September, 2022
1
November, 2021
Software used
2
chromhmm
1
macs
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
files.file_type!
tsv
Showing 3 of 3 results
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE