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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
2
bed bed9
1
bigBed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
89
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
24
adrenal gland
24
liver
23
B cell
21
adipose tissue
21
retina
21
stomach
20
pigmented layer of retina
19
K562
19
MCF-7
19
spleen
18
CD8-positive, alpha-beta T cell
16
body of pancreas
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
14
heart left ventricle
14
islet of Langerhans
14
pancreas
13
Peyer's patch
13
caudate nucleus
13
upper lobe of left lung
12
CD14-positive monocyte
12
endocrine pancreas
12
layer of hippocampus
12
natural killer cell
12
omental fat pad
12
ovary
12
psoas muscle
11
HeLa-S3
11
aorta
11
temporal lobe
10
T cell
10
angular gyrus
10
ascending aorta
10
endothelial cell of hepatic sinusoid
10
esophagus squamous epithelium
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
coronary artery
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
hepatocyte
9
immortal human breast epithelial cell line cell
9
kidney
9
kidney tubule cell
9
parathyroid adenoma
9
skeletal muscle tissue
9
substantia nigra
9
thoracic aorta
8
CD4-positive, alpha-beta T cell
8
T-helper 1 cell
8
cerebellum
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
right atrium auricular region
8
small intestine
8
stomach smooth muscle
8
testis
8
vagina
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
frontal cortex
7
gastroesophageal sphincter
7
kidney glomerular epithelial cell
7
regulatory T cell
7
subcutaneous adipose tissue
6
Brodmann (1909) area 46
6
globus pallidus
6
mammary gland epithelial cell
6
middle frontal gyrus
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
putamen
6
right cardiac atrium
6
skeletal muscle satellite cell
5
Ammon's horn
5
GM12878
5
cerebellar cortex
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
heart right ventricle
5
hepatic stellate cell
5
lung
5
mature neutrophil
5
medulla oblongata
5
mesenchymal stem cell
5
midbrain
5
neutrophil
5
pons
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
5
uterus
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
adipocyte
4
bipolar neuron
4
cartilage tissue
4
fibroblast of dermis
4
glutamatergic neuron
4
heart
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
mucosa of stomach
4
occipital lobe
4
pancreatic alpha cell
4
pancreatic beta cell
4
peripheral blood mononuclear cell
4
right lobe of liver
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
HPDE6-E6E7
3
HuH-7
3
HuH-7.5
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A
3
NCI-H226 cell
3
VCaP cell
3
fibroblast of cardiac tissue
3
iPS-NIHi11
3
iPS-NIHi7
3
inferior parietal cortex
3
inflammatory macrophage
3
luminal epithelial cell of mammary gland
3
mammary stem cell
3
olfactory neurosphere cell line
3
pancreatic delta cell
3
rectum smooth muscle tissue
3
renal cell carcinoma
Organ
5
connective tissue
Life stage
5
adult
4
embryonic
1
unknown
Date released
3
September, 2022
1
February, 2021
1
October, 2019
Software used
2
chromhmm
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
tsv
organ_slims!
limb
Showing 5 of 5 results
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Download
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP