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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
110
monocyte
55
HeLa-S3
47
CD8-positive, alpha-beta T cell
43
H1-hESC
31
endothelial cell
31
neural progenitor cell
30
fibroblast
30
kidney
29
retina
28
heart
27
stomach
23
K562
23
macrophage
20
brain
20
breast cancer cell
20
pigmented layer of retina
20
smooth muscle cell
19
CD14-positive monocyte
19
HFFc6
19
muscle of arm
19
pericyte cell
18
B cell
18
adipocyte
18
adrenal gland
18
hepatocyte
18
lung
17
large intestine
17
placenta
17
small intestine
16
liver
16
muscle of leg
15
common myeloid progenitor, CD34-positive
15
islet of Langerhans
15
keratinocyte
15
muscle of back
14
cardiac muscle cell
14
heart left ventricle
14
pancreatic ductal cell
14
thymus
13
GM12878
13
H9
13
left lung
13
pancreas
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
13
spinal cord
13
spleen
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
astrocyte
12
excitatory neuron
12
foreskin fibroblast
12
hematopoietic multipotent progenitor cell
12
mammary epithelial cell
12
neuroblastoma cell
12
right lung
11
MCF-7
11
endothelial cell of hepatic sinusoid
11
pancreatic beta cell
10
HepG2
10
Rhabdomyosarcoma
10
T cell
10
embryonic stem cell
10
gastric cancer cell
10
neuronal stem cell
10
osteoblast
10
pancreatic acinar cell
9
diffuse intrinsic pontine glioma
9
endothelial cell of umbilical vein
9
erythroblast
9
liposarcoma
9
mesenchymal stem cell
9
natural killer cell
9
right kidney
8
A549
8
B-lymphoblastoid cell line
8
coronary artery
8
fibroblast cell line
8
foreskin keratinocyte
8
pancreatic alpha cell
8
pancreatic delta cell
8
pituitary stalk
8
skeletal muscle myoblast
7
CD4-positive helper T cell
7
Jurkat
7
esophageal adenocarcinoma
7
left cardiac atrium
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
regulatory T cell
7
skeletal muscle satellite cell
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
Rh-4 cell
6
SGBS preadipocytes
6
T-helper 1 cell
6
adipose tissue
6
bronchial epithelial cell
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hESC cell
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
sigmoid colon
6
testis
6
tibial nerve
6
trophoblast cell
6
upper lobe of left lung
5
cardiac fibroblast
5
CD4-positive, alpha-beta memory T cell
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
MM.1S
5
OCI-LY7
5
PC-9
5
Peyer's patch
5
SK-N-MC
5
T-cell acute lymphoblastic leukemia
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
enterocyte
5
glutamatergic neuron
5
hepatic stellate cell
5
lymphoblastoid cell line
5
mesendoderm
5
osteosarcoma
5
ovary
5
prostate cancer cell line
5
skeletal muscle fiber
5
skin fibroblast
5
smooth muscle cell of the coronary artery
5
tibial artery
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
CD1c-positive myeloid dendritic cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
Ishikawa
4
KARPAS-422 cell
4
LHCN-M2
4
LoVo cell
4
MDA-MB-231 cell
4
MG63
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
PANC-1 cell
4
PC-3
4
RPMI8226
4
RS4-11 cell
4
RWPE1
4
SK-N-DZ
4
SK-N-SH
4
SW480
4
T-cell
4
WERI-Rb-1
4
acute myeloid leukemia cell
4
caudate nucleus
4
colon epithelial cell
4
cortical cell of adrenal gland
4
diffuse large B-cell lymphoma
4
erythroid cell
4
esophageal squamous cell carcinoma
4
esophagus squamous epithelium
4
foreskin melanocyte
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
annotation_type!
sQTL
month_released!
September, 2022
Showing 1 of 1 results
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP