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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
110
monocyte
65
stomach
64
heart
61
HeLa-S3
57
kidney
51
brain
50
lung
50
muscle of arm
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
45
H1-hESC
45
placenta
44
A549
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
39
neural progenitor cell
37
thymus
35
K562
34
B cell
34
retina
34
right lung
32
hematopoietic multipotent progenitor cell
32
liver
31
right kidney
30
renal cortex interstitium
30
renal pelvis
29
endothelial cell
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
spleen
23
CD4-positive, alpha-beta memory T cell
23
fibroblast
22
heart left ventricle
21
MCF-7
21
pericyte cell
20
adipocyte
20
breast cancer cell
20
hepatocyte
20
macrophage
20
pigmented layer of retina
20
smooth muscle cell
19
HFFc6
18
adipose tissue
18
foreskin keratinocyte
18
keratinocyte
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
HepG2
16
natural killer cell
16
pancreas
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
H9
15
T cell
15
islet of Langerhans
15
ovary
15
psoas muscle
15
retinal pigment epithelial cell
14
astrocyte
14
cardiac muscle cell
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mesenchymal stem cell
14
mononuclear cell
14
transverse colon
13
fibroblast of cardiac tissue
13
osteoblast
13
pancreatic ductal cell
13
thyroid gland
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
body of pancreas
12
excitatory neuron
12
fibroblast of lung
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
testis
11
EndoC_BH1
11
T-helper 1 cell
11
caudate nucleus
11
chorionic villus
11
endothelial cell of hepatic sinusoid
11
pancreatic beta cell
11
skeletal muscle myoblast
11
tibial nerve
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
coronary artery
10
embryonic stem cell
10
endocrine pancreas
10
gastric cancer cell
10
heart right ventricle
10
mammary gland epithelial cell
10
neuronal stem cell
10
prostate gland
10
skeletal muscle tissue
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
left renal cortex interstitium
9
liposarcoma
9
lymphocyte
9
neurosphere
9
pancreatic acinar cell
9
pancreatic alpha cell
9
right renal pelvis
9
skeletal muscle satellite cell
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
breast epithelium
8
fibroblast cell line
8
pancreatic delta cell
8
pituitary stalk
8
temporal lobe
8
trophoblast
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HT-29
7
IMR-90
7
Jurkat
7
T-helper 17 cell
7
aorta
7
choroid plexus epithelial cell
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
kidney tubule cell
7
left cardiac atrium
7
left renal pelvis
7
lower leg skin
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
omental fat pad
7
right atrium auricular region
7
substantia nigra
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HL-60
6
HUES8
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
parathyroid adenoma
6
thoracic aorta
6
tibial artery
6
tongue
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type!
variant allelic effects
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP