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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
26
endothelial cell
26
fibroblast
19
pericyte cell
18
macrophage
18
smooth muscle cell
15
CD14-positive monocyte
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
11
adipocyte
10
astrocyte
10
pituitary stalk
9
hepatocyte
9
pancreatic acinar cell
9
pancreatic alpha cell
9
pancreatic beta cell
9
pancreatic delta cell
9
pancreatic ductal cell
8
T cell
8
kidney
7
keratinocyte
7
skeletal muscle fiber
7
type II pneumocyte
6
CD8-positive, alpha-beta T cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
enterocyte
6
erythroblast
5
B cell
5
CD4-positive helper T cell
5
basal cell
5
inhibitory neuron
5
left cardiac atrium
5
pancreatic stellate cell
5
skeletal muscle satellite cell
5
type I muscle cell
5
type II muscle cell
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
islet of Langerhans
4
liver
4
luminal epithelial cell of mammary gland
4
memory B cell
4
mesenchymal stem cell
4
mesothelial cell
4
myofibroblast cell
4
natural killer cell
4
pancreatic A cell
4
pancreatic polypeptide-secreting cell
4
smooth muscle cell of the esophagus
4
type B pancreatic cell
4
type I pneumocyte
3
Schwann cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
goblet cell
3
mammary gland epithelial cell
3
mast cell
3
megakaryocyte
3
monocyte
3
oligodendrocyte precursor cell
3
parietal cell
3
peptic cell
3
schwann cell
3
thyroid follicular cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
Muller cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
endothelial cell of umbilical vein
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of lung
2
foveolar cell of stomach
2
glial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
luteal cell
2
mammary epithelial cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
paneth cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
trophoblast cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD34-PB
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
adipose tissue
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
bronchial goblet cell
1
cardiac ventricle
1
cartilage tissue
1
caudate nucleus
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
cingulate gyrus
1
colonic mucosa
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
duodenal mucosa
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of prostate
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of dermis
1
foreskin fibroblast
1
gastric goblet cell
1
gastrocnemius medialis
1
glomerular visceral epithelial cell
Date released
3
November, 2021
1
April, 2020
1
May, 2021
Software used
3
macs
1
abc
Lab
AMP-T2D consortium
3
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Xin Sun, UCSD
Project
3
ENCODE
1
AMP
1
LungMap
RFA
3
ENCODE3
1
AMP
1
LungMap2
lab.title!
AMP-T2D consortium
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR608YQN
released
Annotation file set
: ATAC-seq peaks in B cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR995HIR
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 3 (NPY+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143LGZ
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 2 (CXCR5+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114OHW
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 1 (SPIB+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143KXJ
released
Annotation file set
: enhancer-gene predicton of B_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP