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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
8
tsv
File set status
8
released
Genome assembly (visualization)
45
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
7
cell line
1
stem cell
Biosample term
65
stomach
63
heart
51
brain
50
lung
50
muscle of arm
49
kidney
47
small intestine
46
adrenal gland
45
CD8-positive, alpha-beta T cell
45
placenta
44
A549
43
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
37
thymus
34
retina
34
right lung
32
hematopoietic multipotent progenitor cell
31
B cell
30
liver
30
renal cortex interstitium
30
renal pelvis
30
right kidney
27
CD14-positive monocyte
27
left kidney
27
spinal cord
24
spleen
23
CD4-positive, alpha-beta memory T cell
21
MCF-7
21
adipocyte
20
adipose tissue
20
breast cancer cell
20
heart left ventricle
20
pigmented layer of retina
19
K562
18
foreskin keratinocyte
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
natural killer cell
16
neural progenitor cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
keratinocyte
15
ovary
15
psoas muscle
14
gastrocnemius medialis
14
mesenchymal stem cell
14
mononuclear cell
14
pancreas
14
transverse colon
13
body of pancreas
13
cardiac muscle cell
13
endothelial cell of umbilical vein
13
thyroid gland
13
upper lobe of left lung
12
T cell
12
fibroblast of lung
12
heart right ventricle
12
islet of Langerhans
12
layer of hippocampus
12
mammary epithelial cell
12
monocyte
12
muscle of trunk
12
neuroblastoma cell
12
retinal pigment epithelial cell
12
testis
12
tibial nerve
11
EndoC_BH1
11
HepG2
11
T-helper 1 cell
11
chorionic villus
11
endothelial cell
11
osteoblast
11
skeletal muscle myoblast
10
CD4-positive, alpha-beta T cell
10
HeLa-S3
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
caudate nucleus
10
embryonic stem cell
10
endocrine pancreas
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
macrophage
mammary gland epithelial cell
10
neuronal stem cell
10
prostate gland
10
skeletal muscle tissue
9
GM12878
9
H9
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
liposarcoma
9
neurosphere
8
22Rv1
8
B-lymphoblastoid cell line
8
H1-hESC
8
HEK293
8
IMR-90
8
breast epithelium
8
fibroblast
8
fibroblast cell line
8
hepatocyte
8
pituitary stalk
8
right renal pelvis
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
T-helper 17 cell
7
aorta
7
colonic mucosa
7
coronary artery
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
left renal cortex interstitium
7
left renal pelvis
7
lower leg skin
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
pancreatic beta cell
7
pancreatic ductal cell
7
smooth muscle cell
7
substantia nigra
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
KARPAS-422 cell
6
LNCAP
6
LoVo cell
6
MG63
6
MM.1S
6
NAMALWA cell
6
SK-N-MC
6
chondrocyte
6
choroid plexus epithelial cell
6
cingulate gyrus
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
omental fat pad
6
pancreatic delta cell
6
parathyroid adenoma
6
skin fibroblast
6
thoracic aorta
6
tibial artery
6
tongue
5
Ammon's horn
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
H7-hESC
5
HCT-116 cell
5
HUES6
5
HuH-7
5
KBM-7
5
LHCN-M2
5
OCI-LY7
5
PC-9
5
SGBS preadipocytes
5
SJSA1
5
SK-N-DZ
5
SK-N-SH
5
SW480
5
WERI-Rb-1
5
WI38
Organ
8
embryo
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
macs
2
chromhmm
2
r
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
biosample_term_name!
mammary gland epithelial cell
assembly!
GRCh38
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP