Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
105
monocyte
41
CD8-positive, alpha-beta T cell
27
common myeloid progenitor, CD34-positive
20
B cell
18
endothelial cell
17
fibroblast
14
CD4-positive, alpha-beta memory T cell
14
hepatocyte
13
foreskin fibroblast
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
macrophage
12
mammary epithelial cell
12
osteoblast
12
regulatory T cell
11
astrocyte
11
endothelial cell of umbilical vein
11
foreskin keratinocyte
11
pericyte cell
10
T cell
10
natural killer cell
10
skeletal muscle myoblast
9
CD4-positive, alpha-beta T cell
9
T-helper 1 cell
9
fibroblast of lung
9
keratinocyte
9
smooth muscle cell
9
trophoblast cell
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
bronchial epithelial cell
8
mononuclear cell
8
pancreatic beta cell
8
pancreatic ductal cell
8
retinal pigment epithelial cell
7
T-helper 17 cell
7
T-helper 2 cell
7
erythroblast
7
neurosphere
7
pancreatic alpha cell
7
skeletal muscle satellite cell
6
dermis blood vessel endothelial cell
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
glutamatergic neuron
6
peripheral blood mononuclear cell
5
CD1c-positive myeloid dendritic cell
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
hepatic stellate cell
5
inhibitory neuron
5
kidney tubule cell
5
mammary gland epithelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic acinar cell
5
pancreatic delta cell
5
pulmonary artery endothelial cell
5
skeletal muscle fiber
5
tracheal epithelial cell
4
T-cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
cardiac fibroblast
4
cardiac muscle cell
4
choroid plexus epithelial cell
4
epithelial cell of prostate
4
epithelial cell of proximal tubule
4
fibroblast of breast
4
foreskin melanocyte
4
glomerular visceral epithelial cell
4
kidney glomerular epithelial cell
4
memory B cell
4
myoepithelial cell of mammary gland
4
neutrophil
4
plasma cell
4
preadipocyte
4
renal cortical epithelial cell
4
renal epithelial cell
4
skin fibroblast
4
type II pneumocyte
3
cardiac fibroblast
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
bone marrow cell
3
brain microvascular endothelial cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
erythroid cell
3
fibroblast of peridontal ligament
3
gabaergic neuron
3
glomerular endothelial cell
3
iris pigment epithelial cell
3
kidney epithelial cell
3
luminal epithelial cell of mammary gland
3
lung microvascular endothelial cell
3
mast cell
3
mesenchymal stem cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neoplastic cell
3
non-pigmented ciliary epithelial cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
skeletal muscle cell
3
smooth muscle cell of the brain vasculature
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
T follicular helper cell
2
Th2 cell
2
adipocyte
2
astrocyte of the spinal cord
2
basal cell
2
blood vessel smooth muscle cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
ciliated cell
2
club cell
2
columnar chondrocyte
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of gingiva
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
gamma-delta T cell
2
glial cell
2
head and neck squamous cell carcinoma
2
kidney capillary endothelial cell
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
mature natural killer cell
2
mature neutrophil
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
2
mesothelial cell
2
myofibroblast cell
2
naive regulatory T cell
2
neuron
2
neuronal stem cell
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
2
schwann cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
2
stromal cell of bone marrow
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Glioblastoma
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
alveolar cell type II
Life stage
1
adult
Date released
2
November, 2021
1
November, 2022
Software used
3
macs
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR611RIB
released
Annotation file set
: Accessible chromatin of GABAergic neurons from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR858CQC
released
Annotation file set
: Accessible chromatin annotation of GABAergic Neuron 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR771KJE
released
Annotation file set
: Accessible chromatin annotation of GABAergic Neuron 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE