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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
110
monocyte
65
stomach
64
heart
61
HeLa-S3
56
kidney
51
brain
50
lung
50
muscle of arm
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
45
H1-hESC
45
placenta
44
A549
43
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
39
neural progenitor cell
37
thymus
35
K562
34
B cell
34
retina
34
right lung
32
hematopoietic multipotent progenitor cell
32
liver
31
endothelial cell
31
right kidney
30
fibroblast
30
renal cortex interstitium
30
renal pelvis
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
spleen
23
CD4-positive, alpha-beta memory T cell
23
macrophage
22
adipocyte
22
heart left ventricle
22
smooth muscle cell
21
MCF-7
21
hepatocyte
21
pericyte cell
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
adipose tissue
19
keratinocyte
18
foreskin keratinocyte
17
T cell
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
HepG2
16
natural killer cell
16
pancreas
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
H9
15
islet of Langerhans
15
ovary
15
psoas muscle
14
astrocyte
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mesenchymal stem cell
14
mononuclear cell
14
pancreatic ductal cell
14
transverse colon
13
body of pancreas
13
cardiac muscle cell
13
fibroblast of cardiac tissue
13
retinal pigment epithelial cell
13
thyroid gland
13
tibial nerve
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
excitatory neuron
12
fibroblast of lung
12
heart right ventricle
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
osteoblast
12
pancreatic beta cell
12
testis
11
T-helper 1 cell
11
chorionic villus
11
coronary artery
11
endothelial cell of hepatic sinusoid
11
mammary gland epithelial cell
11
skeletal muscle myoblast
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
caudate nucleus
10
embryonic stem cell
10
endocrine pancreas
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
prostate gland
10
skeletal muscle tissue
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
left renal cortex interstitium
9
liposarcoma
9
lymphocyte
9
neurosphere
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
breast epithelium
8
fibroblast cell line
8
pituitary stalk
8
right renal pelvis
8
temporal lobe
8
trophoblast
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HT-29
7
IMR-90
7
Jurkat
7
T-helper 17 cell
7
aorta
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
left cardiac atrium
7
left renal pelvis
7
lower leg skin
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
omental fat pad
7
right atrium auricular region
7
substantia nigra
7
thoracic aorta
7
tibial artery
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HL-60
6
HUES8
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
chondrocyte
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
parathyroid adenoma
6
tongue
5
Ammon's horn
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
5
HCT-116 cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
month_released!
January, 2020
November, 2020
Showing 1 of 1 results
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP