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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
4
bigWig
3
bigBed narrowPeak
1
tsv
0
bed gappedPeak
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
15
retina
13
pigmented layer of retina
10
hepatocyte
4
endothelial cell of hepatic sinusoid
4
islet of Langerhans
4
pancreatic alpha cell
4
pancreatic beta cell
3
pancreas
3
pancreatic delta cell
2
coronary artery
2
heart left ventricle
2
omental fat pad
2
pancreatic polypeptide-secreting cell
1
cardiac fibroblast
1
Ammon's horn
1
HepG2
1
ascending aorta
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
endothelial cell
1
frontal cortex
1
globus pallidus
1
glomerular visceral epithelial cell
1
heart
1
hepatic stellate cell
1
kidney
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
liver
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
occipital lobe
1
osteoblast
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic stellate cell
1
pons
1
proximal tubule cells with injury markers
1
putamen
1
renal intercalated cell
1
renal principal cell
1
right atrium auricular region
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
tibial artery
1
tibial nerve
Organ
4
epithelium
4
pancreas
Life stage
4
adult
1
newborn
1
unknown
Date released
2
February, 2024
1
February, 2021
1
October, 2019
Software used
2
macs
1
cicero
1
deltasvm
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR616QUT
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR450SMN
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic beta cell snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR373LDZ
released
Annotation file set
: pancreatic beta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP