Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
snATAC-seq
Available data
3
bed bed3+
2
bigWig
1
bam
1
bed gappedPeak
1
tsv
1
xls
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
107
monocyte
66
heart
63
stomach
60
HeLa-S3
52
brain
51
muscle of arm
50
kidney
50
lung
46
small intestine
44
adrenal gland
44
placenta
43
A549
43
H1-hESC
42
large intestine
42
muscle of leg
41
CD8-positive, alpha-beta T cell
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
39
neural progenitor cell
36
thymus
35
retina
34
right lung
33
K562
32
hematopoietic multipotent progenitor cell
31
renal cortex interstitium
31
renal pelvis
31
right kidney
29
B cell
28
liver
27
left kidney
26
spinal cord
24
heart left ventricle
24
spleen
23
CD4-positive, alpha-beta memory T cell
20
MCF-7
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
adipose tissue
18
foreskin keratinocyte
17
pancreas
16
foreskin fibroblast
16
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
14
H9
14
HepG2
14
cardiac muscle cell
14
mononuclear cell
14
ovary
14
psoas muscle
14
regulatory T cell
14
retinal pigment epithelial cell
14
tibial nerve
13
GM12878
13
gastrocnemius medialis
13
hepatocyte
13
transverse colon
13
upper lobe of left lung
12
CD14-positive monocyte
12
EndoC_BH1
12
heart right ventricle
12
islet of Langerhans
12
neuroblastoma cell
12
osteoblast
12
testis
12
thyroid gland
11
T-helper 1 cell
11
body of pancreas
11
caudate nucleus
11
chorionic villus
11
coronary artery
11
endothelial cell of umbilical vein
11
muscle of trunk
11
natural killer cell
10
CD4-positive, alpha-beta T cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
adipocyte
10
bronchial epithelial cell
10
embryonic stem cell
10
endocrine pancreas
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
keratinocyte
10
layer of hippocampus
10
mammary epithelial cell
10
mesenchymal stem cell
10
prostate gland
10
right renal pelvis
10
skeletal muscle tissue
9
T cell
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
fibroblast of lung
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
mammary gland epithelial cell
9
neuronal stem cell
9
neurosphere
9
skeletal muscle myoblast
9
tibial artery
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
choroid plexus epithelial cell
8
epithelial cell of prostate
8
fibroblast cell line
8
fibroblast of dermis
8
right atrium auricular region
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HL-60
7
IMR-90
7
T-helper 17 cell
7
aorta
7
breast epithelium
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
kidney tubule cell
7
lower leg skin
7
neutrophil
7
omental fat pad
7
temporal lobe
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HAP-1
6
HT-29
6
HUES8
6
MG63
6
NAMALWA cell
6
SK-N-MC
6
ascending aorta
6
chondrocyte
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
mesendoderm
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
parathyroid adenoma
6
skin fibroblast
6
substantia nigra
6
tongue
5
cardiac fibroblast
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
HCT116
5
HUES6
5
HuH-7
5
Jurkat
5
KARPAS-422 cell
5
KBM-7
5
LHCN-M2
5
LoVo cell
5
MM.1S
5
OCI-LY1
5
SGBS preadipocytes
5
SJSA1
5
SK-N-DZ
5
SW480
5
WERI-Rb-1
5
WI38
5
acute myeloid leukemia
5
astrocyte
5
chorion membrane
5
cingulate gyrus
5
colonic mucosa
Organ
3
epithelium
3
pancreas
Life stage
1
adult
1
newborn
1
unknown
Date released
2
October, 2019
1
September, 2022
Software used
3
macs
Lab
7
Kyle Gaulton, UCSD
3
AMP-T2D consortium
2
Bing Ren, UCSD
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR055KAB
released
Annotation file set
: Accessible chromatin from snATAC-seq of beta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR112LAM
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 2 children samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR616QUT
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP