Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
3
bigWig
0
bed gappedPeak
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
14
fibroblast
12
excitatory neuron
11
endothelial cell
11
macrophage
10
pericyte cell
7
astrocyte
6
smooth muscle cell
5
T cell
5
erythroblast
5
inhibitory neuron
4
B cell
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
type II pneumocyte
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
pancreatic delta cell
3
pancreatic ductal cell
3
skeletal muscle fiber
3
skeletal muscle satellite cell
3
type I pneumocyte
2
CD8-positive, alpha-beta T cell
2
Muller cell
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
ciliated cell
2
club cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glutamatergic neuron
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
natural killer cell
2
oligodendrocyte precursor cell
2
schwann cell
2
smooth muscle cell of the esophagus
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
alveolar macrophage
1
basal cell of epidermis
1
cardiac endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
glial cell
1
goblet cell
1
granular cell of epidermis
1
hepatic stellate cell
1
hepatoblast
1
hepatocyte
1
intestinal tuft cell
1
islet of Langerhans
1
lung neuroendocrine cell
1
luteal cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
monocyte
1
myoepithelial cell
1
myofibroblast cell
1
naive B cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
1
neuron
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
plasmacytoid dendritic cell
1
regular atrial cardiac myocyte
1
regulatory T cell
1
respiratory goblet cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
thyroid follicular cell
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type I muscle cell
1
type II cell of adrenal cortex
1
type II muscle cell
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Organ
3
epithelium
3
pancreas
Date released
2
January, 2021
1
November, 2021
Software used
3
macs
Lab
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
AMP
2
T1D
1
ENCODE
RFA
2
T1D
1
ENCODE3
award.project!
AMP
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR181PDQ
released
Annotation file set
: Accessible chromatin annotation of Pancreatic Delta,Gamma cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR821QOK
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR247PPG
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D