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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
snATAC-seq
Available data
12
bed bed3+
9
bigWig
5
tsv
3
bigBed narrowPeak
1
bam
1
bed gappedPeak
1
xls
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
2
pancreatic polypeptide-secreting cell
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic stellate cell
Organ
4
epithelium
4
pancreas
Life stage
3
adult
1
unknown
Date released
2
February, 2024
1
February, 2021
1
September, 2022
Software used
2
macs
1
cicero
1
deltasvm
Lab
3
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR055KAB
released
Annotation file set
: Accessible chromatin from snATAC-seq of beta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR450SMN
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic beta cell snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR373LDZ
released
Annotation file set
: pancreatic beta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP