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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
0
bed gappedPeak
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
110
monocyte
56
HeLa-S3
44
H1-hESC
40
CD8-positive, alpha-beta T cell
34
neural progenitor cell
31
endothelial cell
30
fibroblast
29
heart
29
kidney
29
retina
28
K562
25
stomach
23
A549
23
brain
23
macrophage
20
B cell
20
breast cancer cell
20
pericyte cell
20
pigmented layer of retina
20
smooth muscle cell
19
CD14-positive monocyte
19
HFFc6
19
adipocyte
19
hepatocyte
19
liver
18
adrenal gland
18
muscle of arm
18
placenta
17
lung
17
small intestine
17
thymus
16
islet of Langerhans
16
keratinocyte
16
large intestine
15
muscle of leg
14
HepG2
14
T cell
14
pancreatic ductal cell
13
GM12878
13
heart left ventricle
13
retinal pigment epithelial cell
12
EndoC_BH1
12
MCF-7
12
adipose tissue
12
astrocyte
12
common myeloid progenitor, CD34-positive
12
excitatory neuron
12
left lung
12
muscle of back
12
neuroblastoma cell
12
pancreas
12
pancreatic beta cell
12
renal pelvis
12
spinal cord
11
endothelial cell of hepatic sinusoid
11
hematopoietic multipotent progenitor cell
11
osteoblast
11
right kidney
10
Rhabdomyosarcoma
10
embryonic stem cell
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
mesenchymal stem cell
10
natural killer cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
renal cortex interstitium
10
right lung
9
CD4-positive, alpha-beta memory T cell
9
cardiac muscle cell
9
coronary artery
9
diffuse intrinsic pontine glioma
9
erythroblast
9
liposarcoma
9
mammary gland epithelial cell
9
pancreatic delta cell
9
regulatory T cell
9
spleen
8
B-lymphoblastoid cell line
8
H9
8
fibroblast cell line
8
foreskin fibroblast
8
mammary epithelial cell
8
pituitary stalk
7
CD4-positive helper T cell
7
CD8-positive, alpha-beta memory T cell
7
Jurkat
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
foreskin keratinocyte
7
left kidney
7
lymphocyte
7
neuronal stem cell
7
ovary
7
psoas muscle
7
sigmoid colon
7
skeletal muscle myoblast
7
skeletal muscle satellite cell
7
tibial nerve
6
Chondroid Chordoma
6
GM19240
6
HUES8
6
IMR-90
6
Rh-4 cell
6
SGBS preadipocytes
6
chondrocyte
6
hESC cell
6
heart right ventricle
6
layer of hippocampus
6
left cardiac atrium
6
mesendoderm
6
neuroblastoma cell line
6
skin fibroblast
6
tibial artery
6
trophoblast cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
Caco-2 cell
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19238
5
GM19239
5
HAP-1
5
HCT-116 cell
5
HEK293
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
LoVo cell
5
MM.1S
5
NAMALWA cell
5
NT2-D1 cell
5
OCI-LY7
5
PC-9
5
T-cell acute lymphoblastic leukemia
5
T-helper 2 cell
5
acute myeloid leukemia
5
caudate nucleus
5
colon epithelial cell
5
enterocyte
5
epithelial cell of prostate
5
fibroblast of lung
5
glutamatergic neuron
5
hepatic stellate cell
5
lymphoblastoid cell line
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
right atrium auricular region
5
skeletal muscle fiber
5
smooth muscle cell of the coronary artery
5
type I muscle cell
4
22Rv1
4
Ammon's horn
4
B-lymphocyte
4
CD1c-positive myeloid dendritic cell
4
CD4-positive, alpha-beta T cell
4
CMK
4
COLO205
4
GM12875
4
GM12891
4
GM12892
4
GM18505
4
GM18507
4
GM19099
4
GM19193
4
GM23248
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
HuH-7
4
LHCN-M2
4
LNCAP
4
MDA-MB-231 cell
4
MG63
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
Normal Human Astrocytes
4
PANC-1 cell
4
PC-3
4
Peyer's patch
4
RPMI8226
4
RS4-11 cell
4
RWPE1
4
SK-N-MC
4
SW480
4
WERI-Rb-1
4
acute myeloid leukemia cell
4
aortic endothelial cell
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
files.file_type!
bed bed9
annotation_type!
candidate regulatory elements
Showing 1 of 1 results
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP