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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
ATAC-seq
1
snATAC-seq
Available data
22
bed bed3+
7
tsv
5
bigWig
3
bed bed9
0
bigBed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
16
monocyte
16
retina
14
endothelial cell
14
fibroblast
13
excitatory neuron
13
pigmented layer of retina
12
hepatocyte
11
kidney
11
macrophage
10
pericyte cell
9
pancreatic beta cell
8
astrocyte
8
pancreatic alpha cell
7
pancreatic acinar cell
7
pancreatic ductal cell
7
smooth muscle cell
6
B cell
6
endothelial cell of hepatic sinusoid
6
heart left ventricle
6
islet of Langerhans
6
pancreatic delta cell
5
T cell
5
embryonic stem cell
5
erythroblast
5
heart
5
inhibitory neuron
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
coronary artery
4
memory B cell
4
pancreas
4
pancreatic stellate cell
4
retinal pigment epithelial cell
4
type II pneumocyte
3
cardiac fibroblast
3
brain
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
enterocyte
3
heart right ventricle
3
liver
3
muscle of leg
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
osteoblast
3
pancreatic polypeptide-secreting cell
3
regulatory T cell
3
skeletal muscle fiber
3
tibial artery
3
tibial nerve
3
type I pneumocyte
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SGBS preadipocytes
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipocyte
2
angular gyrus
2
aorta
2
aortic endothelial cell
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
hepatic stellate cell
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
oligodendrocyte precursor cell
2
omental fat pad
2
plasma cell
2
plasmacytoid dendritic cell
2
right atrium auricular region
2
right cardiac atrium
2
schwann cell
2
smooth muscle cell of the esophagus
2
subcutaneous adipose tissue
2
temporal lobe
2
thoracic aorta
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
Ammon's horn
1
CD4-positive, alpha-beta T cell
1
EndoC_BH1
1
HepG2
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipose tissue
1
alveolar macrophage
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac endothelial cell
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
extravillous trophoblast
1
fetal heart
1
fetal thymocyte
1
forelimb muscle
1
foveolar cell of stomach
1
frontal cortex
1
gastric goblet cell
1
germinal matrix
1
glial cell
1
globus pallidus
1
glomerular endothelial cell
1
goblet cell
1
granular cell of epidermis
1
hepatoblast
1
hippocampal neuron
1
immature natural killer cell
1
intestinal tuft cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
leukocyte
1
lower motor neuron
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
medulla oblongata
1
melanocyte
1
metanephros
1
microglial cell
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
myeloid dendritic cell
1
myoepithelial cell
1
myofibroblast cell
1
naive regulatory T cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
Organ
1
connective tissue
Date released
2
January, 2020
2
May, 2020
1
January, 2021
Software used
3
macs
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
Showing 5 of 5 results
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Download
FileSet
DSR591ZJC
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of regulatory_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR308PJT
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal regulatory T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR977ZGG
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated regulatory T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR742XWK
released
Annotation file set
: Preadipose SGBS cell line accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR780QAJ
released
Annotation file set
: SGBS differentiated adipocytes accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP